SRR1546410_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546410_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	398354
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1044	0.26207845283340947	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1024	0.2570577928174438	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	844	0.2118718526737525	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTCG	30	2.161918E-6	45.000004	41
GCGATGA	60	0.0	45.000004	9
TTGCATA	30	2.161918E-6	45.000004	1
TCCCCGC	30	2.161918E-6	45.000004	32
ACGGTCT	60	0.0	45.000004	30
AGCGTAA	50	2.1827873E-11	45.0	1
GGTACTA	35	1.2092642E-7	45.0	38
CGAAATG	20	7.027731E-4	45.0	45
TTTACGG	35	1.2092642E-7	45.0	2
TATGGTA	20	7.027731E-4	45.0	1
CCGGATA	35	1.2092642E-7	45.0	20
GCCGGAT	35	1.2092642E-7	45.0	19
TACGGGT	20	7.027731E-4	45.0	4
CGACAAG	20	7.027731E-4	45.0	2
ATACTCG	45	3.8380676E-10	45.0	44
TGATTCG	20	7.027731E-4	45.0	15
TTAAGCC	20	7.027731E-4	45.0	14
CGCTAAG	20	7.027731E-4	45.0	2
CAAGGCG	20	7.027731E-4	45.0	5
GCGATAT	20	7.027731E-4	45.0	9