##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546410_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 398354 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.991088328471662 31.0 31.0 33.0 30.0 33.0 2 31.139586900093885 31.0 31.0 33.0 30.0 34.0 3 31.081708731429835 31.0 31.0 34.0 28.0 34.0 4 35.042035475983674 35.0 35.0 37.0 32.0 37.0 5 32.70487054228149 35.0 35.0 37.0 28.0 37.0 6 33.909916807663535 35.0 35.0 37.0 28.0 37.0 7 15.480276337127279 0.0 0.0 35.0 0.0 37.0 8 25.0070439860024 17.0 17.0 35.0 17.0 37.0 9 32.75813221406086 32.0 32.0 37.0 27.0 39.0 10 35.54576331604553 37.0 35.0 37.0 32.0 39.0 11 36.440106036339536 37.0 35.0 39.0 32.0 39.0 12 36.14451216756955 37.0 35.0 39.0 32.0 39.0 13 35.614428372753885 37.0 35.0 39.0 30.0 39.0 14 36.611496307304556 38.0 35.0 40.0 31.0 41.0 15 37.0627984154797 39.0 35.0 40.0 32.0 41.0 16 37.185520918579954 39.0 35.0 41.0 32.0 41.0 17 37.193835131566395 39.0 35.0 41.0 32.0 41.0 18 37.08500228440031 38.0 35.0 40.0 32.0 41.0 19 36.99981674590942 39.0 35.0 40.0 32.0 41.0 20 37.0983647710328 39.0 35.0 40.0 32.0 41.0 21 36.926208849415346 39.0 35.0 40.0 32.0 41.0 22 36.96170491572822 39.0 35.0 40.0 32.0 41.0 23 36.972564603342754 38.0 35.0 40.0 32.0 41.0 24 36.8209758154807 38.0 35.0 40.0 32.0 41.0 25 36.55612093765846 38.0 35.0 40.0 31.0 41.0 26 36.41818583470983 38.0 35.0 40.0 31.0 41.0 27 36.30203286524046 38.0 35.0 40.0 31.0 41.0 28 36.25813723472088 38.0 35.0 40.0 31.0 41.0 29 36.33741345637298 38.0 35.0 40.0 31.0 41.0 30 36.10659112246896 38.0 35.0 40.0 30.0 41.0 31 35.95463833675575 38.0 34.0 40.0 30.0 41.0 32 35.80806267791964 38.0 34.0 40.0 30.0 41.0 33 35.587977025459764 38.0 34.0 40.0 29.0 41.0 34 35.461122519166366 38.0 34.0 40.0 28.0 41.0 35 35.25534072709198 38.0 34.0 40.0 27.0 41.0 36 35.04432238662095 38.0 34.0 40.0 25.0 41.0 37 34.85266371117147 38.0 34.0 40.0 25.0 41.0 38 34.79531773246911 38.0 33.0 40.0 25.0 41.0 39 34.69704835397661 37.0 33.0 40.0 24.0 41.0 40 34.509519171390274 37.0 33.0 40.0 23.0 41.0 41 34.42048027633713 37.0 33.0 40.0 23.0 41.0 42 34.3827374646671 37.0 33.0 40.0 23.0 41.0 43 34.27951018440884 37.0 33.0 40.0 23.0 41.0 44 34.08101337001762 37.0 33.0 40.0 23.0 41.0 45 33.988695983974054 36.0 33.0 40.0 23.0 41.0 46 33.985929600305255 36.0 33.0 40.0 23.0 41.0 47 33.95883309819909 36.0 33.0 40.0 23.0 41.0 48 33.95201504189741 36.0 33.0 40.0 23.0 41.0 49 33.874152136039804 36.0 33.0 40.0 23.0 41.0 50 33.71179654277351 36.0 33.0 40.0 23.0 41.0 51 33.496259608288106 35.0 32.0 40.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 1.0 14 5.0 15 10.0 16 70.0 17 110.0 18 276.0 19 515.0 20 958.0 21 1395.0 22 2170.0 23 3185.0 24 4554.0 25 6170.0 26 7245.0 27 8036.0 28 8573.0 29 10067.0 30 12076.0 31 15934.0 32 20953.0 33 32397.0 34 40334.0 35 39922.0 36 43896.0 37 66925.0 38 61233.0 39 11342.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.028065489489247 24.24953684411353 30.59891453330455 15.123483133092677 2 31.1326106930017 24.39287668756935 31.424562072930108 13.049950546498842 3 28.75583024144354 23.86997494690652 33.97505736104068 13.399137450609258 4 25.615909467458593 28.022060780110152 31.36556931774251 14.996460434688744 5 21.017486958835608 37.52140056331805 28.98878886618435 12.47232361166199 6 22.37657962515752 39.648152146081124 27.432886327236577 10.542381901524776 7 38.26019068466741 56.582838379933435 4.423452507066579 0.7335184283325886 8 88.17132500238482 3.4441727709524694 6.991771138233832 1.3927310884288848 9 84.46683100960453 4.817323285319088 8.306430963414451 2.409414741661939 10 56.806257750643894 21.566998197583054 12.56144032694538 9.065303724827665 11 52.23720610311432 17.639335867093088 18.800363495785156 11.323094534007442 12 45.31170767709123 20.87515124738298 21.667411397902367 12.145729677623422 13 20.86460786134945 42.982874528685535 23.045582572284953 13.106935037680053 14 14.641499771559968 44.97457035701913 26.958936021729418 13.42499384969148 15 13.899697254201037 21.448761654207065 51.72560084748741 12.925940244104488 16 14.520250832174398 16.86590319163357 50.78698845750262 17.82685751868941 17 15.65592412778584 17.54795985480251 29.26567826606486 37.53043775134679 18 21.460058139242985 22.566862639762622 34.374199832309955 21.598879388684438 19 30.262028246233253 21.905892748660737 26.953162262711057 20.878916742394953 20 33.09920322125547 21.978441285891442 24.409695898622832 20.512659594230257 21 23.109595987488515 27.166791346390397 28.31401216003856 21.40960050608253 22 22.038438173082234 24.98656973445729 26.2442450684567 26.730747024003776 23 19.88281779522736 30.161112979912343 25.33575663856771 24.620312586292595 24 19.989506820566632 23.062401783338437 39.85048474472454 17.09760665137039 25 16.357059299015447 24.452120475757745 37.785487280157845 21.40533294506896 26 16.20769466354047 35.036675921416624 28.82386018465988 19.931769230383026 27 17.91722939897679 33.82167619755293 30.164376408922717 18.09671799454756 28 14.349799424632362 28.734492436375685 40.148209883671306 16.767498255320646 29 14.77881482299663 24.181004834895596 40.02294441627296 21.01723592583481 30 18.239053706000192 29.602062487134557 32.71612686203728 19.442756944827966 31 29.570432329033974 26.38231321889576 24.29597794926121 19.75127650280906 32 31.423055874925314 26.661210882782648 26.029611852774163 15.886121389517866 33 29.0251886513001 27.14595560732414 25.302871315463133 18.525984425912633 34 20.292001586528567 27.06662917907188 28.68754926522641 23.95381996917315 35 20.435341429984387 25.345797958599636 31.266160249426388 22.952700361989585 36 31.09821917189234 24.465174191799257 26.175462026237966 18.26114461007044 37 21.078990044031187 32.45153807919589 28.64889018310347 17.82058169366945 38 21.031042740878718 33.469978963434535 23.56095332292383 21.93802497276292 39 21.48566350532441 32.07950717201283 26.318801869693793 20.116027452968968 40 24.419737218654763 26.186256445272292 24.44810394774497 24.94590238832797 41 17.495996023637268 24.548768181065086 26.29269443761077 31.66254135768688 42 22.54677999969876 25.62670388649292 23.0533645953097 28.773151518498626 43 22.64920146402446 26.978014529790084 25.113090366859623 25.259693639325825 44 19.98423512754987 31.560119893361183 27.37841216606335 21.0772328130256 45 17.597664388960574 37.04092339979014 22.76894420540524 22.59246800584405 46 21.414872199099293 33.78326814843079 24.899210250179486 19.902649402290425 47 21.836607640440413 27.240595048625092 27.297077473804706 23.62571983712979 48 24.012310658359148 22.744091938326214 30.46410981187587 22.77948759143877 49 20.5061327362095 23.399539103410536 32.5082715373763 23.58605662300366 50 19.012486381459706 33.746617330314244 26.011788509717487 21.229107778508563 51 19.041857242553107 34.456538656571794 23.257956490960304 23.2436476099148 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 153.0 1 313.5 2 474.0 3 2028.0 4 3582.0 5 2798.0 6 2014.0 7 2029.5 8 2045.0 9 2179.5 10 2314.0 11 2270.0 12 2226.0 13 2149.5 14 2073.0 15 1968.0 16 1863.0 17 1832.5 18 1802.0 19 1647.5 20 1493.0 21 1580.0 22 1667.0 23 1716.5 24 1766.0 25 2143.5 26 2891.5 27 3262.0 28 4031.5 29 4801.0 30 5531.5 31 6262.0 32 7015.5 33 7769.0 34 8367.0 35 8965.0 36 10316.5 37 11668.0 38 16705.0 39 21742.0 40 29393.0 41 37044.0 42 40297.5 43 43551.0 44 41055.5 45 38560.0 46 36094.0 47 33628.0 48 31433.0 49 29238.0 50 27326.5 51 25415.0 52 23834.0 53 22253.0 54 20470.0 55 18687.0 56 17129.5 57 15572.0 58 14360.5 59 13149.0 60 11904.5 61 10660.0 62 9049.0 63 7438.0 64 6026.5 65 4615.0 66 3743.5 67 2872.0 68 2449.0 69 2026.0 70 1662.0 71 1298.0 72 1087.5 73 877.0 74 664.5 75 362.0 76 272.0 77 203.5 78 135.0 79 112.5 80 90.0 81 64.0 82 38.0 83 25.5 84 13.0 85 10.5 86 8.0 87 4.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 398354.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.93156024176844 #Duplication Level Percentage of deduplicated Percentage of total 1 67.33858861870216 17.461946673615383 2 7.051691332885943 3.657227172101765 3 3.752268820923621 2.9190655491927098 4 2.683699611150122 2.7837007254939974 5 2.072546563892959 2.6872183037730233 6 1.6930676714339148 2.6342331789107516 7 1.473433505189228 2.674590079143815 8 1.2757758967299555 2.64662876168392 9 1.1320262469742397 2.6419686136807985 >10 11.349211552235692 55.94807094755427 >50 0.15872325056886927 2.6026211435087916 >100 0.015972151000640932 0.5889161628687588 >500 9.982594375400583E-4 0.21848142481812413 >1k 0.0019965188750801165 0.5353312636538872 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1044 0.26207845283340947 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1024 0.2570577928174438 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 844 0.2118718526737525 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007782023024746833 0.0 2 0.0 0.0 0.0 0.044432841141296434 0.0 3 0.0 0.0 0.0 0.05623139217881583 0.0 4 0.0 0.0 0.0 0.08459812126902203 0.0 5 0.0 0.0 0.0 0.143590876456619 0.0 6 0.0 0.0 0.0 0.2003243346370314 0.0 7 0.0 0.0 0.0 0.2429999447727398 0.0 8 0.0 0.0 0.0 0.47570753651274994 0.0 9 0.0 0.0 0.0 0.5495112387474458 0.0 10 0.0 0.0 0.0 0.7124316562655326 0.0 11 0.0 0.0 0.0 0.8705824467684522 0.0 12 0.0 0.0 0.0 0.9978561781731826 0.0 13 0.0 0.0 0.0 1.0573509993623762 0.0 14 0.0 0.0 0.0 1.077433639426239 0.0 15 0.0 0.0 0.0 1.1183520185563594 0.0 16 0.0 0.0 0.0 1.2021970408229865 0.0 17 0.0 0.0 0.0 1.3176722211901977 0.0 18 0.0 0.0 0.0 1.4662837576627823 0.0 19 0.0 0.0 0.0 1.534815766880714 0.0 20 0.0 0.0 0.0 1.6048539741034356 0.0 21 0.0 0.0 0.0 1.7070244054283377 0.0 22 0.0 0.0 0.0 1.8059314077428619 0.0 23 0.0 0.0 0.0 1.9342092711507854 0.0 24 0.0 0.0 0.0 2.015794996410228 0.0 25 0.0 0.0 0.0 2.0843270056281598 0.0 26 0.0 0.0 0.0 2.1588838068652505 0.0 27 0.0 0.0 0.0 2.2276668490839806 0.0 28 0.0 0.0 0.0 2.307244310337037 0.0 29 0.0 0.0 0.0 2.388579002595681 0.0 30 0.0 0.0 0.0 2.481963278892643 0.0 31 0.0 0.0 0.0 2.5926688322446867 0.0 32 0.0 0.0 0.0 2.683793811534464 0.0 33 0.0 0.0 0.0 2.775922922827435 0.0 34 0.0 0.0 0.0 2.868554100122002 0.0 35 0.0 0.0 0.0 3.0048650195554707 0.0 36 0.0 0.0 0.0 3.1168257379115056 0.0 37 0.0 0.0 0.0 3.2242678622531717 0.0 38 0.0 0.0 0.0 3.326438293578074 0.0 39 0.0 0.0 0.0 3.429612856906169 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTCG 30 2.161918E-6 45.000004 41 GCGATGA 60 0.0 45.000004 9 TTGCATA 30 2.161918E-6 45.000004 1 TCCCCGC 30 2.161918E-6 45.000004 32 ACGGTCT 60 0.0 45.000004 30 AGCGTAA 50 2.1827873E-11 45.0 1 GGTACTA 35 1.2092642E-7 45.0 38 CGAAATG 20 7.027731E-4 45.0 45 TTTACGG 35 1.2092642E-7 45.0 2 TATGGTA 20 7.027731E-4 45.0 1 CCGGATA 35 1.2092642E-7 45.0 20 GCCGGAT 35 1.2092642E-7 45.0 19 TACGGGT 20 7.027731E-4 45.0 4 CGACAAG 20 7.027731E-4 45.0 2 ATACTCG 45 3.8380676E-10 45.0 44 TGATTCG 20 7.027731E-4 45.0 15 TTAAGCC 20 7.027731E-4 45.0 14 CGCTAAG 20 7.027731E-4 45.0 2 CAAGGCG 20 7.027731E-4 45.0 5 GCGATAT 20 7.027731E-4 45.0 9 >>END_MODULE