SRR1546408_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546408_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	267959
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1083	0.40416630902488815	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	530	0.19779145317007454	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	474	0.17689273358984023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCT	25	3.8827733E-5	45.000004	5
AATCCCC	25	3.8827733E-5	45.000004	37
GATACCC	25	3.8827733E-5	45.000004	25
ACACGGG	25	3.8827733E-5	45.000004	3
ATTAGGC	25	3.8827733E-5	45.000004	4
ATAGGTC	25	3.8827733E-5	45.000004	5
TTAGCTA	25	3.8827733E-5	45.000004	1
CGACGGG	25	3.8827733E-5	45.000004	3
ACGTTGA	25	3.8827733E-5	45.000004	1
GCCGATT	25	3.8827733E-5	45.000004	9
CTAGTAG	25	3.8827733E-5	45.000004	2
GAGCGTA	25	3.8827733E-5	45.000004	36
TCATGTA	25	3.8827733E-5	45.000004	1
TCGTCCT	25	3.8827733E-5	45.000004	10
GTCGTCC	25	3.8827733E-5	45.000004	9
CGTACTA	25	3.8827733E-5	45.000004	39
GCGCTCC	25	3.8827733E-5	45.000004	29
CTTAGGC	25	3.8827733E-5	45.000004	4
CGTCAAG	25	3.8827733E-5	45.000004	2
GCGTACT	25	3.8827733E-5	45.000004	38