##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546408_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 267959 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.017301154281064 31.0 31.0 33.0 30.0 33.0 2 31.1749707977713 31.0 31.0 33.0 30.0 34.0 3 31.161819532092597 31.0 31.0 34.0 28.0 34.0 4 35.11024447769994 35.0 35.0 37.0 33.0 37.0 5 32.86112800838934 35.0 35.0 37.0 28.0 37.0 6 34.03192652607302 35.0 35.0 37.0 28.0 37.0 7 15.186584514795173 0.0 0.0 35.0 0.0 37.0 8 24.83800879985371 17.0 17.0 35.0 17.0 37.0 9 32.67294250239775 32.0 32.0 37.0 27.0 39.0 10 35.5376792718289 37.0 35.0 37.0 32.0 39.0 11 36.49242981202348 37.0 35.0 39.0 32.0 39.0 12 36.20090386962185 37.0 35.0 39.0 32.0 39.0 13 35.72789120723693 37.0 35.0 39.0 31.0 39.0 14 36.762728626394335 39.0 35.0 40.0 31.0 41.0 15 37.20036274206129 39.0 35.0 41.0 32.0 41.0 16 37.30791277770107 39.0 35.0 41.0 32.0 41.0 17 37.313297929907186 39.0 35.0 41.0 32.0 41.0 18 37.20191521837296 39.0 35.0 40.0 32.0 41.0 19 37.111128941367895 39.0 35.0 40.0 32.0 41.0 20 37.18873782929478 39.0 35.0 40.0 32.0 41.0 21 37.03791998029549 39.0 35.0 40.0 32.0 41.0 22 37.099705551968775 39.0 35.0 40.0 32.0 41.0 23 37.10070570497725 39.0 35.0 40.0 32.0 41.0 24 36.925652805093314 38.0 35.0 40.0 32.0 41.0 25 36.68056307121612 38.0 35.0 40.0 31.0 41.0 26 36.5550289409947 38.0 35.0 40.0 31.0 41.0 27 36.426651092144695 38.0 35.0 40.0 31.0 41.0 28 36.353360028959656 38.0 35.0 40.0 31.0 41.0 29 36.44343351035047 38.0 35.0 40.0 31.0 41.0 30 36.21227128030781 38.0 35.0 40.0 30.0 41.0 31 36.08864415824809 38.0 35.0 40.0 30.0 41.0 32 35.96627842319161 38.0 34.0 40.0 30.0 41.0 33 35.7626129370538 38.0 34.0 40.0 29.0 41.0 34 35.62861109348818 38.0 34.0 40.0 29.0 41.0 35 35.46684007628033 38.0 34.0 40.0 28.0 41.0 36 35.23781996499464 38.0 34.0 40.0 27.0 41.0 37 35.039259737497154 38.0 34.0 40.0 26.0 41.0 38 35.03746468676178 38.0 34.0 40.0 26.0 41.0 39 34.974316966401574 38.0 34.0 40.0 26.0 41.0 40 34.80234662765572 37.0 34.0 40.0 24.0 41.0 41 34.73997141353715 37.0 34.0 40.0 24.0 41.0 42 34.67565187211476 37.0 33.0 40.0 24.0 41.0 43 34.59434838911923 37.0 33.0 40.0 24.0 41.0 44 34.379169947641245 37.0 33.0 40.0 23.0 41.0 45 34.312782925746106 37.0 33.0 40.0 23.0 41.0 46 34.29751939662411 37.0 33.0 40.0 23.0 41.0 47 34.25889408454278 36.0 33.0 40.0 23.0 41.0 48 34.2442575170082 36.0 33.0 40.0 23.0 41.0 49 34.158117473195524 36.0 33.0 40.0 24.0 41.0 50 34.05422098156808 36.0 33.0 40.0 24.0 41.0 51 33.86941285793722 36.0 33.0 40.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 4.0 14 5.0 15 6.0 16 33.0 17 66.0 18 137.0 19 279.0 20 557.0 21 865.0 22 1315.0 23 1936.0 24 2825.0 25 3743.0 26 4568.0 27 4861.0 28 5340.0 29 6393.0 30 7826.0 31 10305.0 32 13917.0 33 21386.0 34 27343.0 35 27328.0 36 30223.0 37 46007.0 38 42968.0 39 7721.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.826577946626166 24.6858661213096 29.971749409424575 15.515806522639657 2 29.791497953045052 24.83775502968738 32.24747069514366 13.123276322123905 3 30.072137901693917 22.659809896290103 34.47579667038614 12.79225553162984 4 26.265585406722668 27.424344769162445 31.09654835254647 15.213521471568411 5 21.554790098485217 37.16799958202561 28.44203777443564 12.835172545053533 6 21.896633440190477 39.500445963748184 28.091611030045645 10.511309566015695 7 37.47774846151837 57.512529901962615 4.163323493519531 0.8463981429994888 8 87.94554390783664 3.7251967651767623 6.702891113939073 1.6263682130475183 9 84.43530540119943 4.833575285771331 8.042275124179445 2.688844188849787 10 58.02492172309943 20.253471613194556 12.691493847939423 9.030112815766591 11 54.05080628006523 17.43774234117906 17.496333394287934 11.015117984467773 12 46.42426639896402 20.8143783190712 20.983434032818455 11.777921249146324 13 20.912900854235165 44.45754760989554 21.32826290589232 13.301288629976973 14 14.021548072652907 45.54801294227848 26.40665176388925 14.02378722117936 15 12.698211293518785 22.009710440776388 52.68194014755989 12.61013811814494 16 14.443254378468348 15.459454618057238 51.20186297157401 18.8954280319004 17 15.32585208931217 17.100004105105633 28.81075089845835 38.76339290712385 18 21.561507544064575 21.938804070772022 34.71949066834852 21.780197716814886 19 31.664545695423552 22.327296340111733 25.10570647001967 20.902451494445046 20 34.05931504446576 21.357745028157293 24.880298851689997 19.70264107568695 21 23.396116570072287 27.890460854085887 27.08884568161547 21.624576894226355 22 23.614060359980446 24.62242357972675 24.41642191529301 27.347094144999794 23 20.72742471796058 30.75246586231476 24.566444866565405 23.95366455315925 24 20.46133923473367 22.50866737075448 40.038961184360296 16.991032210151552 25 16.699196518870423 24.584358054777038 37.33892125287824 21.3775241734743 26 16.40512167906284 35.67933900335499 27.59937154564691 20.31616777193526 27 18.210621774226652 35.163588459428496 29.175732108270296 17.450057658074556 28 14.838090901966345 28.873447057199048 40.422228773804946 15.866233267029658 29 15.127314253299945 24.001806246478004 39.528062128907784 21.34281737131427 30 18.468870237610975 31.035344959490068 31.311879802507097 19.183905000391853 31 29.45711843976131 26.732447874488262 24.550770826880232 19.2596628588702 32 32.08214689560717 26.11295011550274 25.713635294951843 16.091267693938253 33 29.66200052993182 27.309775002892234 24.156680686224384 18.871543780951562 34 19.62203172873462 27.112356741143234 28.016226362988366 25.249385167133774 35 20.455741363417538 24.767221851104086 31.265604066293722 23.51143271918465 36 31.687310372109167 24.014867946215652 26.078243313342714 18.219578368332467 37 20.910288514287632 33.03938289066611 28.969357252415485 17.080971342630775 38 19.83363126448449 33.442056434006695 23.51926973902724 23.205042562481573 39 21.02299232345247 32.32919961635922 27.15975205161984 19.488056008568474 40 24.351486608025855 26.029355237181807 24.773939296683448 24.84521885810889 41 17.34108576312048 24.210793442280348 26.724610854645675 31.723509939953498 42 22.552703958441402 24.571669546460466 23.935378173526548 28.94024832157158 43 22.69339712418691 26.6798278841166 24.894480125690873 25.732294866005624 44 19.82355509611545 30.75209267089368 27.81619576129184 21.60815647169903 45 17.42094872723066 38.63538824969492 21.839161961344832 22.104501061729593 46 21.82684664444934 34.96654338910057 23.839467978310115 19.367141988139977 47 22.539642258703758 27.483682205113467 26.05137353102527 23.925302005157505 48 23.855515209416367 22.72996988345232 31.099533883915075 22.314981023216237 49 20.50574901384167 23.832004149888604 32.460562996577835 23.201683839691896 50 18.71890848973164 34.38996264353875 25.931579084859997 20.95954978186961 51 18.123668173116037 35.798013875257034 22.600472460339084 23.477845491287848 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 88.0 1 195.5 2 303.0 3 1174.5 4 2046.0 5 1647.5 6 1249.0 7 1265.5 8 1282.0 9 1296.5 10 1311.0 11 1356.5 12 1402.0 13 1314.0 14 1226.0 15 1172.5 16 1119.0 17 1057.5 18 996.0 19 928.0 20 860.0 21 918.5 22 977.0 23 1046.5 24 1116.0 25 1305.5 26 2025.5 27 2556.0 28 3107.5 29 3659.0 30 4042.0 31 4425.0 32 4978.5 33 5532.0 34 5809.5 35 6087.0 36 6973.5 37 7860.0 38 11532.5 39 15205.0 40 19795.5 41 24386.0 42 27146.5 43 29907.0 44 28235.0 45 26563.0 46 24722.0 47 22881.0 48 21041.5 49 19202.0 50 18196.5 51 17191.0 52 15754.5 53 14318.0 54 13010.5 55 11703.0 56 10772.5 57 9842.0 58 9514.0 59 9186.0 60 8236.0 61 7286.0 62 6185.0 63 5084.0 64 4160.5 65 3237.0 66 2723.0 67 2209.0 68 1890.5 69 1572.0 70 1263.5 71 955.0 72 810.5 73 666.0 74 563.0 75 366.0 76 272.0 77 215.5 78 159.0 79 110.0 80 61.0 81 38.0 82 15.0 83 10.5 84 6.0 85 3.5 86 1.0 87 2.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 267959.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.458085005541893 #Duplication Level Percentage of deduplicated Percentage of total 1 66.69639110365087 18.980515675905643 2 6.9017519932857745 3.9282128982418953 3 3.9983738984473356 3.413581928578626 4 2.8587914393621485 3.254229191779339 5 2.271296684851028 3.2318377065148027 6 1.938208140998741 3.30946152209853 7 1.6523289970625261 3.2915483338869005 8 1.4530004196391104 3.307968756414228 9 1.3782522031053295 3.530017651954217 >10 10.774234158623583 51.44331782100993 >50 0.0642572387746538 1.1554006396500958 >100 0.01049097775912715 0.5519501117708306 >500 0.0013113722198908938 0.19779145317007454 >1k 0.0013113722198908938 0.40416630902488815 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1083 0.40416630902488815 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 530 0.19779145317007454 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 474 0.17689273358984023 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010822551211192757 0.0 2 0.0 0.0 0.0 0.03657275926541001 0.0 3 0.0 0.0 0.0 0.04814169331875399 0.0 4 0.0 0.0 0.0 0.06829403005683705 0.0 5 0.0 0.0 0.0 0.10971827779623002 0.0 6 0.0 0.0 0.0 0.1485301855880937 0.0 7 0.0 0.0 0.0 0.16868252232617675 0.0 8 0.0 0.0 0.0 0.32206419638825345 0.0 9 0.0 0.0 0.0 0.3799088666549733 0.0 10 0.0 0.0 0.0 0.5086599069260596 0.0 11 0.0 0.0 0.0 0.6351717986706922 0.0 12 0.0 0.0 0.0 0.7538466705727369 0.0 13 0.0 0.0 0.0 0.8019883638914909 0.0 14 0.0 0.0 0.0 0.8221407006295739 0.0 15 0.0 0.0 0.0 0.8516228228945473 0.0 16 0.0 0.0 0.0 0.9146921730563258 0.0 17 0.0 0.0 0.0 0.9979138599561873 0.0 18 0.0 0.0 0.0 1.1124836262264004 0.0 19 0.0 0.0 0.0 1.1665963822823642 0.0 20 0.0 0.0 0.0 1.2281729667598402 0.0 21 0.0 0.0 0.0 1.3016916767117357 0.0 22 0.0 0.0 0.0 1.385286555032673 0.0 23 0.0 0.0 0.0 1.4729865389854417 0.0 24 0.0 0.0 0.0 1.5506103545691692 0.0 25 0.0 0.0 0.0 1.6140528961520233 0.0 26 0.0 0.0 0.0 1.6782418205770286 0.0 27 0.0 0.0 0.0 1.7342205337383705 0.0 28 0.0 0.0 0.0 1.795423926794771 0.0 29 0.0 0.0 0.0 1.8618519997462297 0.0 30 0.0 0.0 0.0 1.940595389593184 0.0 31 0.0 0.0 0.0 2.015606865229382 0.0 32 0.0 0.0 0.0 2.0853936609705217 0.0 33 0.0 0.0 0.0 2.152194925343056 0.0 34 0.0 0.0 0.0 2.229818740926784 0.0 35 0.0 0.0 0.0 2.3358051045122576 0.0 36 0.0 0.0 0.0 2.437313171044824 0.0 37 0.0 0.0 0.0 2.519042092260383 0.0 38 0.0 0.0 0.0 2.6082348418974544 0.0 39 0.0 0.0 0.0 2.684739083217955 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGCT 25 3.8827733E-5 45.000004 5 AATCCCC 25 3.8827733E-5 45.000004 37 GATACCC 25 3.8827733E-5 45.000004 25 ACACGGG 25 3.8827733E-5 45.000004 3 ATTAGGC 25 3.8827733E-5 45.000004 4 ATAGGTC 25 3.8827733E-5 45.000004 5 TTAGCTA 25 3.8827733E-5 45.000004 1 CGACGGG 25 3.8827733E-5 45.000004 3 ACGTTGA 25 3.8827733E-5 45.000004 1 GCCGATT 25 3.8827733E-5 45.000004 9 CTAGTAG 25 3.8827733E-5 45.000004 2 GAGCGTA 25 3.8827733E-5 45.000004 36 TCATGTA 25 3.8827733E-5 45.000004 1 TCGTCCT 25 3.8827733E-5 45.000004 10 GTCGTCC 25 3.8827733E-5 45.000004 9 CGTACTA 25 3.8827733E-5 45.000004 39 GCGCTCC 25 3.8827733E-5 45.000004 29 CTTAGGC 25 3.8827733E-5 45.000004 4 CGTCAAG 25 3.8827733E-5 45.000004 2 GCGTACT 25 3.8827733E-5 45.000004 38 >>END_MODULE