SRR1546406_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546406_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	667265
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2242	0.33599844139884455	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1708	0.25597026668564965	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1593	0.2387357346781264	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	926	0.13877544903449154	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	813	0.1218406480184035	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	731	0.10955167736956081	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGT	20	7.031158E-4	45.0	34
ATTTACG	20	7.031158E-4	45.0	1
AGTCCAT	20	7.031158E-4	45.0	44
ATTAGCC	40	6.8084773E-9	45.0	12
CATGCGC	20	7.031158E-4	45.0	27
CGTGCGG	25	3.8890415E-5	45.0	2
GGCCGTA	25	3.8890415E-5	45.0	40
CCTGTCG	20	7.031158E-4	45.0	19
ACGGGTA	20	7.031158E-4	45.0	5
ATCGTAG	20	7.031158E-4	45.0	45
AAAGTCG	20	7.031158E-4	45.0	39
ACGATCT	25	3.8890415E-5	45.0	16
CTAACGG	20	7.031158E-4	45.0	2
CCCCGAC	20	7.031158E-4	45.0	25
GAGCGTA	20	7.031158E-4	45.0	15
TTAAGCC	25	3.8890415E-5	45.0	32
CGTAGAT	20	7.031158E-4	45.0	13
GAACGTC	20	7.031158E-4	45.0	15
CATACTC	20	7.031158E-4	45.0	14
TCGAGGA	25	3.8890415E-5	45.0	4