SRR1546404_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546404_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1103946
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3673	0.3327155494924571	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3159	0.2861553010745091	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2469	0.22365224385975402	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	7.033167E-4	45.0	43
AGCCGAA	25	3.8907056E-5	45.0	37
GGTACGA	20	7.033167E-4	45.0	8
ACCGAAG	20	7.033167E-4	45.0	2
TCGGAAC	20	7.033167E-4	45.0	13
TACGCCC	20	7.033167E-4	45.0	43
TCTACGA	20	7.033167E-4	45.0	27
TCTCGTC	20	7.033167E-4	45.0	28
CGCTAAG	20	7.033167E-4	45.0	2
ACTCGAA	20	7.033167E-4	45.0	1
GCGGCAT	20	7.033167E-4	45.0	24
ATGCGAA	50	2.1827873E-11	45.0	1
GCGTGAC	20	7.033167E-4	45.0	38
TAAGCGA	20	7.033167E-4	45.0	2
GGTTACG	20	7.033167E-4	45.0	8
CCGTTAG	20	7.033167E-4	45.0	41
CTCGTAG	30	2.1654232E-6	44.999996	2
GCGAAAA	30	2.1654232E-6	44.999996	1
CGGTTTA	65	0.0	44.999996	1
TACGCAA	60	0.0	44.999996	1