SRR1546402_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546402_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	477205
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1282	0.26864764618979264	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1096	0.22967068660219403	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	926	0.19404658375331357	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	583	0.122169717417043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGGA	55	1.8189894E-12	45.000004	4
CTAGTAA	65	0.0	45.000004	1
GTTATCC	30	2.1628239E-6	45.000004	24
TCCGGAA	20	7.0291356E-4	45.0	19
TCGCCCG	20	7.0291356E-4	45.0	26
AACGTAA	20	7.0291356E-4	45.0	1
GGCAGTA	25	3.887366E-5	45.0	8
GTCGCCC	20	7.0291356E-4	45.0	25
CTATCCA	20	7.0291356E-4	45.0	31
TAGGTTA	20	7.0291356E-4	45.0	6
GGACTAT	40	6.8012014E-9	45.0	8
CCGTGTT	35	1.2099372E-7	45.0	24
CGACCCG	25	3.887366E-5	45.0	32
ACTTCGA	20	7.0291356E-4	45.0	38
GATCAGT	20	7.0291356E-4	45.0	9
CGCGATC	20	7.0291356E-4	45.0	36
GCGTTCC	25	3.887366E-5	45.0	11
TCGATCA	25	3.887366E-5	45.0	17
CGTTCGT	20	7.0291356E-4	45.0	40
CGTTCAC	25	3.887366E-5	45.0	22