SRR1546400_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546400_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	805026
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1771	0.21999289463942778	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1566	0.19452787860267867	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1479	0.1837207742358632	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1250	0.15527448802895807	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	925	0.11490312114142898	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTAAG	60	0.0	45.000004	2
TGCACGG	30	2.1646883E-6	45.000004	2
TCGTTAG	25	3.8897608E-5	45.0	2
GTCGAAA	20	7.0320256E-4	45.0	1
GCGAATA	50	2.1827873E-11	45.0	1
CGGTTTA	25	3.8897608E-5	45.0	1
GACCGAC	20	7.0320256E-4	45.0	9
TGCGCAA	50	2.1827873E-11	45.0	1
TCATGCG	25	3.8897608E-5	45.0	34
CCGAATG	20	7.0320256E-4	45.0	1
CCGGTGA	20	7.0320256E-4	45.0	37
CGGTCTA	70	0.0	45.0	31
CGCGTAG	25	3.8897608E-5	45.0	2
TGCGTAA	35	1.2113196E-7	45.0	1
CGTTTTA	1135	0.0	42.81938	1
AATAGGC	175	0.0	42.42857	4
CGCGACC	80	0.0	42.1875	10
TGATAAG	225	0.0	42.0	2
AGGCGAT	675	0.0	42.0	7
TAAGGCG	140	0.0	41.785713	5