SRR1546398_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546398_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	265774
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1175	0.44210494630776526	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	534	0.20092258836455035	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	412	0.15501892585429727	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGT	25	3.8826864E-5	45.000004	44
TTAGGAT	70	0.0	45.000004	5
TTCACTA	25	3.8826864E-5	45.000004	16
CGATTGA	25	3.8826864E-5	45.000004	10
CGCGAAG	25	3.8826864E-5	45.000004	2
CGGGCCA	25	3.8826864E-5	45.000004	20
TAAGGCG	50	2.1827873E-11	45.000004	5
AGGATCC	70	0.0	45.000004	7
AGTAGCG	25	3.8826864E-5	45.000004	1
TACACGG	25	3.8826864E-5	45.000004	2
TCACGAC	20	7.02349E-4	45.0	25
AACCGGT	20	7.02349E-4	45.0	16
GATCGTT	20	7.02349E-4	45.0	9
TCACCCG	20	7.02349E-4	45.0	14
CGACGGT	20	7.02349E-4	45.0	28
GTCCTCG	20	7.02349E-4	45.0	41
GGACTAC	20	7.02349E-4	45.0	8
ATTCGTA	20	7.02349E-4	45.0	1
CAATTAG	20	7.02349E-4	45.0	2
CGATTGC	20	7.02349E-4	45.0	10