SRR1546396_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546396_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	67022
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	175	0.2611082927993793	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	131	0.19545820775267822	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106	0.15815702306705262	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGCC	45	3.7289283E-10	45.000004	10
GTATGGC	45	3.7289283E-10	45.000004	9
CTTAAGG	25	3.8514787E-5	45.0	3
TAATATT	20	6.985775E-4	45.0	36
CTATGCT	20	6.985775E-4	45.0	36
TGATAAG	20	6.985775E-4	45.0	2
TCGTTGA	20	6.985775E-4	45.0	24
CCGGGGG	20	6.985775E-4	45.0	5
TTAATCG	20	6.985775E-4	45.0	20
CTGTACA	20	6.985775E-4	45.0	16
GTACACT	20	6.985775E-4	45.0	18
TTCAGAG	20	6.985775E-4	45.0	2
CGAAAGT	20	6.985775E-4	45.0	14
GTTTCAG	20	6.985775E-4	45.0	19
AGGAGCC	20	6.985775E-4	45.0	7
GGCACCG	20	6.985775E-4	45.0	8
GGACTTG	20	6.985775E-4	45.0	8
CATGAAG	20	6.985775E-4	45.0	2
CACATAG	20	6.985775E-4	45.0	34
CGTTGAT	20	6.985775E-4	45.0	25