##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546395_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 871842 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.529734745515817 31.0 31.0 33.0 30.0 34.0 2 31.732445787195385 31.0 31.0 34.0 30.0 34.0 3 31.811177942792387 31.0 31.0 34.0 30.0 34.0 4 35.71072052046128 37.0 35.0 37.0 35.0 37.0 5 27.179506149049942 35.0 26.0 37.0 0.0 37.0 6 31.389360686913456 35.0 28.0 37.0 17.0 37.0 7 14.922378137323047 0.0 0.0 32.0 0.0 37.0 8 25.05603997054512 17.0 17.0 35.0 17.0 37.0 9 33.17016730095591 32.0 32.0 37.0 28.0 39.0 10 35.99761998160217 37.0 35.0 39.0 32.0 39.0 11 37.000548264479114 39.0 37.0 39.0 34.0 39.0 12 37.13037109935057 39.0 37.0 39.0 34.0 39.0 13 36.80402068264662 39.0 35.0 39.0 33.0 39.0 14 38.18107982868455 40.0 37.0 41.0 33.0 41.0 15 38.40378761289316 40.0 37.0 41.0 34.0 41.0 16 38.40721828037649 40.0 37.0 41.0 34.0 41.0 17 38.39827170519429 40.0 37.0 41.0 34.0 41.0 18 38.366869226304765 40.0 37.0 41.0 34.0 41.0 19 38.33544954246297 40.0 37.0 41.0 34.0 41.0 20 38.38071691889127 40.0 37.0 41.0 34.0 41.0 21 38.2725551189321 40.0 37.0 41.0 34.0 41.0 22 38.19646793799794 40.0 37.0 41.0 34.0 41.0 23 38.09429575542357 40.0 36.0 41.0 34.0 41.0 24 37.96834288781683 40.0 36.0 41.0 34.0 41.0 25 37.79698156317314 40.0 35.0 41.0 33.0 41.0 26 37.55275153066725 39.0 35.0 41.0 33.0 41.0 27 37.3676388611698 39.0 35.0 40.0 33.0 41.0 28 37.4064887904001 39.0 35.0 40.0 33.0 41.0 29 37.37794577457842 39.0 35.0 40.0 33.0 41.0 30 37.16685248015122 39.0 35.0 40.0 32.0 41.0 31 37.014991248414276 39.0 35.0 40.0 32.0 41.0 32 36.85905358998534 39.0 35.0 40.0 32.0 41.0 33 36.69112981480589 39.0 35.0 40.0 31.0 41.0 34 36.47070340726875 39.0 35.0 40.0 31.0 41.0 35 36.31974027404048 39.0 35.0 40.0 30.0 41.0 36 36.157350758509 38.0 35.0 40.0 30.0 41.0 37 36.04412611459416 38.0 35.0 40.0 30.0 41.0 38 35.89379727060637 38.0 35.0 40.0 30.0 41.0 39 35.81067670518282 38.0 35.0 40.0 30.0 41.0 40 35.608603393734185 38.0 35.0 40.0 29.0 41.0 41 35.415889576322314 38.0 34.0 40.0 29.0 41.0 42 35.413010614308554 38.0 34.0 40.0 29.0 41.0 43 35.31200492749833 38.0 34.0 40.0 28.0 41.0 44 35.07682814087874 38.0 34.0 40.0 27.0 40.0 45 34.87608075775198 37.0 34.0 40.0 27.0 40.0 46 34.80634908618764 37.0 34.0 40.0 27.0 40.0 47 34.67066739156866 37.0 34.0 40.0 27.0 40.0 48 34.583025364687636 37.0 34.0 39.0 26.0 40.0 49 34.41419546202179 36.0 33.0 39.0 26.0 40.0 50 34.54554150866785 37.0 34.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 3.0 13 1.0 14 5.0 15 19.0 16 32.0 17 95.0 18 269.0 19 475.0 20 876.0 21 1458.0 22 2368.0 23 3642.0 24 5769.0 25 8416.0 26 10874.0 27 12462.0 28 13618.0 29 15602.0 30 19362.0 31 25590.0 32 35886.0 33 60912.0 34 68179.0 35 89872.0 36 127513.0 37 237783.0 38 102618.0 39 28140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.462581522798853 23.81234214456289 29.309324395934127 15.415751936704128 2 31.350175834612237 23.976592088933547 31.48173636966331 13.19149570679091 3 29.204144787702358 23.88024435620216 33.82963885658181 13.085971999513674 4 26.94089066596929 27.01429846233607 31.59333916007717 14.451471711617472 5 17.545036830067833 48.15104112901191 23.60163882905389 10.70228321186637 6 22.11776904530867 40.57180085382443 26.81345931946385 10.496970781403052 7 39.6071765296923 55.941214119072036 3.4268823938282393 1.02472695740742 8 88.70013144583537 2.8780444163047894 6.83931262774677 1.582511510113071 9 83.37347822197141 5.2797410539983165 8.440061387269711 2.9067193367605597 10 42.28816689262504 33.17229498005372 13.695027309994243 10.844510817326993 11 35.88586005262421 21.86978833320716 25.597413292775528 16.646938321393094 12 33.126529807006314 21.31108618304693 28.15303690347563 17.409347106471127 13 21.304318901819368 31.181682002014128 29.10997634892561 18.4040227472409 14 17.194055803689203 32.877746197132055 30.89493279745642 19.03326520172233 15 17.08910559482108 24.209547142716225 41.20115800798769 17.500189254475007 16 19.639911818884613 21.49162348223646 38.5218881402823 20.346576558596627 17 19.592999649018974 21.80418011520436 29.91367701945995 28.68914321631672 18 22.127977316990926 23.805116064608036 32.34714546901847 21.71976114938257 19 27.051346459564922 24.330899406085045 27.33281947875877 21.284934655591265 20 29.05090601278672 22.54812225150887 27.593073056815342 20.807898678889064 21 24.614322319869885 24.945460301293124 28.748442951819253 21.69177442701774 22 24.421970953452576 23.09569853253227 27.601790232633896 24.880540281381258 23 22.08278564235263 26.475439357131226 28.233326680751787 23.20844831976436 24 20.930971437485233 23.445073763365382 35.720692510798976 19.903262288350412 25 20.425031140963615 25.815457387921203 32.25940021242381 21.50011125869137 26 20.465634828328984 29.26952360634152 27.990278054968677 22.274563510360824 27 19.542875888062287 28.7258471145001 29.94843102305234 21.782845974385268 28 18.43820325242418 26.771938034643895 34.31986529669367 20.469993416238264 29 19.48277325478699 23.37613925458971 33.94147104635932 23.199616444263985 30 21.19363370886009 26.5126020540419 30.963064408459328 21.330699828638675 31 26.175958487891155 25.8770511170602 26.760238667097937 21.186751727950707 32 26.60218250554573 25.619435631685555 27.65764897768174 20.120732885086976 33 25.956193897518126 26.730760848869405 26.623287247001176 20.68975800661129 34 21.512384124646438 25.98980090429229 29.322400159661953 23.175414811399314 35 22.4269993875037 25.673000383096937 30.062442506784485 21.83755772261488 36 25.97110485615513 26.693483452276904 26.740625021506194 20.594786670061776 37 22.02509170239562 29.54526164144421 27.945315779694024 20.484330876466146 38 21.819205773523183 29.7206374549517 26.671919912094168 21.788236859430953 39 22.207234797130674 28.983233200511098 26.97988855778914 21.829643444569086 40 24.15689998875943 26.219773766347572 27.19311526629825 22.430210978594744 41 19.886974933531533 25.8353004328766 28.092475471473044 26.185249162118822 42 22.19633832735748 26.18536386180065 25.559447698092086 26.058850112749788 43 22.403256553366322 26.916459633740974 26.987458736789467 23.692825076103237 44 21.055076493217808 27.762713886231676 28.37314559289413 22.809064027656387 45 20.217654116227482 30.65348996721883 25.855946375604756 23.272909540948934 46 21.12435510103895 29.92354119209673 27.564856935086862 21.387246771777455 47 21.919682694800205 26.454678714721247 28.95260838546434 22.67303020501421 48 22.390639588365783 23.93403850697718 30.404018159253628 23.27130374540341 49 20.532734142195487 25.987506910655828 31.087972361964667 22.39178658518401 50 19.940654384624736 29.55432291630823 28.785605648729927 21.719417050337103 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 247.0 1 721.5 2 1196.0 3 5484.5 4 9773.0 5 7104.0 6 4435.0 7 4410.0 8 4385.0 9 4405.0 10 4425.0 11 4333.5 12 4242.0 13 3968.0 14 3694.0 15 3573.0 16 3452.0 17 3243.0 18 3034.0 19 3108.5 20 3183.0 21 3484.0 22 3785.0 23 4398.0 24 5011.0 25 6417.5 26 7824.0 27 9872.0 28 11920.0 29 13961.0 30 16002.0 31 17871.0 32 19740.0 33 23544.5 34 27349.0 35 29764.0 36 32179.0 37 34900.0 38 37621.0 39 44125.0 40 50629.0 41 57244.5 42 63860.0 43 65661.5 44 67463.0 45 67237.0 46 67011.0 47 65851.5 48 64692.0 49 63969.5 50 63247.0 51 58454.0 52 53661.0 53 50066.0 54 46471.0 55 44205.5 56 41940.0 57 40441.5 58 38943.0 59 36501.5 60 34060.0 61 30299.0 62 26538.0 63 22280.5 64 18023.0 65 14866.0 66 11709.0 67 9899.0 68 8089.0 69 6775.5 70 5462.0 71 4307.0 72 3152.0 73 2447.0 74 1742.0 75 1283.0 76 824.0 77 648.5 78 473.0 79 342.5 80 212.0 81 152.0 82 92.0 83 60.0 84 28.0 85 20.0 86 12.0 87 8.0 88 4.0 89 5.0 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 871842.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.847190504596092 #Duplication Level Percentage of deduplicated Percentage of total 1 65.4902646257605 16.27249081352682 2 6.782789928381989 3.3706654700632597 3 3.7027030458631462 2.7600530388752937 4 2.8131022395099254 2.795907490160361 5 2.2849544275993035 2.838734897844011 6 2.0444657323272186 3.0479537718751777 7 1.7445493384946449 3.0343004830770473 8 1.5089573198375166 2.999467999144601 9 1.3646600297736498 3.0517170960414286 >10 12.105115187887918 56.51275106510543 >50 0.14740762222663156 2.2125488167892864 >100 0.009024956458004295 0.31880137497297173 >500 5.013864698891275E-4 0.11087660169048257 >1k 0.0015041594096673826 0.6737310808338535 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2884 0.3307938823777703 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1299 0.14899488668818434 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1225 0.14050711023327622 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 890 0.10208271682254352 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008717175818554279 0.0 2 0.0 0.0 0.0 0.025233930001078177 0.0 3 0.0 0.0 0.0 0.03211591091046313 0.0 4 0.0 0.0 0.0 0.044503476547356056 0.0 5 0.0 0.0 0.0 0.07765168459422693 0.0 6 0.0 0.0 0.0 0.12892244236914488 0.0 7 0.0 0.0 0.0 0.16792033418899296 0.0 8 0.0 0.0 0.0 0.36795657928844905 0.0 9 0.0 0.0 0.0 0.4503109508374224 0.0 10 0.0 0.0 0.0 0.5899004636161139 0.0 11 0.0 0.0 0.0 0.7355690595314288 0.0 12 0.0 0.0 0.0 0.8652943996733353 0.0 13 0.0 0.0 0.0 0.9171386558573686 0.0 14 0.0 0.0 0.0 0.9331966113126002 0.0 15 0.0 0.0 0.0 0.9646243241321248 0.0 16 0.0 0.0 0.0 1.0325265357713898 0.0 17 0.0 0.0 0.0 1.1288742685027793 0.0 18 0.0 0.0 0.0 1.2501118321897775 0.0 19 0.0 0.0 0.0 1.3152612514652884 0.0 20 0.0 0.0 0.0 1.3879808497411228 0.0 21 0.0 0.0 0.0 1.486622576108974 0.0 22 0.0 0.0 0.0 1.5901963887952175 0.0 23 0.0 0.0 0.0 1.7095987575730465 0.0 24 0.0 0.0 0.0 1.7944765221221277 0.0 25 0.0 0.0 0.0 1.867081420716139 0.0 26 0.0 0.0 0.0 1.9367041275827501 0.0 27 0.0 0.0 0.0 2.0111442210859307 0.0 28 0.0 0.0 0.0 2.079505231452488 0.0 29 0.0 0.0 0.0 2.1553217211375455 0.0 30 0.0 0.0 0.0 2.2525870513235198 0.0 31 0.0 0.0 0.0 2.3442320971001624 0.0 32 0.0 0.0 0.0 2.4380564368314444 0.0 33 0.0 0.0 0.0 2.532224875608195 0.0 34 0.0 0.0 0.0 2.6314401003851615 0.0 35 0.0 0.0 0.0 2.7515306672539293 0.0 36 0.0 0.0 0.0 2.8521222882127724 0.0 37 0.0 0.0 0.0 2.963725078626632 0.0 38 0.0 0.0 0.0 3.0614492075398982 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 40 8.309144E-9 44.000004 4 AATTCGC 20 7.8554335E-4 44.000004 13 TCGACGC 20 7.8554335E-4 44.000004 16 GGTTACG 20 7.8554335E-4 44.000004 1 CGACGGT 50 2.7284841E-11 44.0 28 GACCGTA 25 4.4419525E-5 44.0 9 CTAACGG 25 4.4419525E-5 44.0 2 CGTTTTA 1590 0.0 43.308174 1 AGGCGAT 720 0.0 41.555557 7 AACGGGA 315 0.0 41.20635 4 CGTTATT 965 0.0 41.03627 1 CGTTTTT 925 0.0 40.194595 1 GCGATTC 110 0.0 40.0 9 AGCGTTA 45 2.3497705E-8 39.11111 1 CGTATGG 115 0.0 38.26087 2 TTAGGAT 375 0.0 38.13333 5 TAAACGG 75 0.0 38.13333 2 GGATGCC 925 0.0 38.054054 8 GTTTTAT 1990 0.0 38.030148 2 TTTACGG 105 0.0 37.714287 2 >>END_MODULE