SRR1546394_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546394_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	334006
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	762	0.2281396142584265	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	750	0.22454686442758515	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	352	0.10538732837134662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	25	3.8848433E-5	45.000004	2
GCCGATT	25	3.8848433E-5	45.000004	9
GTATAGA	25	3.8848433E-5	45.000004	1
CGCAAAG	25	3.8848433E-5	45.000004	2
TTAGGAC	145	0.0	45.0	5
ACGCCGG	20	7.0260925E-4	45.0	27
GCACCTA	20	7.0260925E-4	45.0	9
ATCGTAG	20	7.0260925E-4	45.0	2
TCGTGCA	20	7.0260925E-4	45.0	1
TACGCAA	20	7.0260925E-4	45.0	1
CCATAAC	20	7.0260925E-4	45.0	29
GCGATTC	35	1.2084638E-7	45.0	9
CTTCTCG	20	7.0260925E-4	45.0	13
CGGTCTA	20	7.0260925E-4	45.0	31
CGTTTTA	430	0.0	43.430237	1
CAAGGAT	190	0.0	42.63158	5
CGTTTTT	650	0.0	42.576923	1
GGACCGA	135	0.0	41.666668	8
GAGGTAT	60	3.6379788E-12	41.249996	6
TAGGCGA	60	3.6379788E-12	41.249996	6