##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546394_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 334006 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.012167446093784 31.0 31.0 33.0 30.0 33.0 2 31.17754172080741 31.0 31.0 33.0 30.0 34.0 3 31.146392579774016 31.0 31.0 34.0 28.0 34.0 4 35.12908750142213 35.0 35.0 37.0 33.0 37.0 5 32.848095543193836 35.0 35.0 37.0 28.0 37.0 6 34.035484392495945 35.0 35.0 37.0 28.0 37.0 7 15.200241911821943 0.0 0.0 35.0 0.0 37.0 8 24.85825703729873 17.0 17.0 35.0 17.0 37.0 9 32.65163500056885 32.0 32.0 37.0 27.0 39.0 10 35.4355879834494 37.0 34.0 37.0 32.0 39.0 11 36.4333934120944 37.0 35.0 39.0 32.0 39.0 12 36.40507056759459 37.0 35.0 39.0 32.0 39.0 13 36.28401884996078 38.0 35.0 39.0 32.0 39.0 14 37.385457147476394 39.0 36.0 40.0 32.0 41.0 15 37.648907504655604 39.0 36.0 41.0 33.0 41.0 16 37.60957587588247 39.0 36.0 41.0 33.0 41.0 17 37.558295359963594 39.0 36.0 41.0 32.0 41.0 18 37.47067717346395 39.0 36.0 41.0 32.0 41.0 19 37.44177050711664 39.0 36.0 41.0 32.0 41.0 20 37.57256755866661 39.0 36.0 41.0 32.0 41.0 21 37.46487188852895 39.0 36.0 41.0 32.0 41.0 22 37.51601468237097 39.0 36.0 41.0 32.0 41.0 23 37.483305689119355 39.0 35.0 41.0 33.0 41.0 24 37.33008089675036 39.0 35.0 41.0 32.0 41.0 25 37.07381304527463 39.0 35.0 40.0 32.0 41.0 26 36.958821099022174 39.0 35.0 40.0 31.0 41.0 27 36.90237001730508 39.0 35.0 40.0 31.0 41.0 28 36.81851823021143 39.0 35.0 40.0 31.0 41.0 29 36.82292833062879 39.0 35.0 40.0 31.0 41.0 30 36.555513972802885 38.0 35.0 40.0 30.0 41.0 31 36.46997658724693 38.0 35.0 40.0 30.0 41.0 32 36.40927408489668 38.0 35.0 40.0 30.0 41.0 33 36.24066932929349 38.0 35.0 40.0 30.0 41.0 34 36.105599899403 38.0 35.0 40.0 30.0 41.0 35 35.94921348718287 38.0 35.0 40.0 29.0 41.0 36 35.75052244570457 38.0 35.0 40.0 28.0 41.0 37 35.67634114357227 38.0 35.0 40.0 28.0 41.0 38 35.59234564648539 38.0 34.0 40.0 27.0 41.0 39 35.469060436040074 38.0 34.0 40.0 27.0 41.0 40 35.340601665838335 38.0 34.0 40.0 26.0 41.0 41 35.205089130135384 38.0 34.0 40.0 26.0 41.0 42 35.15404513691371 38.0 34.0 40.0 26.0 41.0 43 35.100261671946015 38.0 34.0 40.0 26.0 41.0 44 34.87600821542128 38.0 34.0 40.0 25.0 41.0 45 34.818988281647634 38.0 34.0 40.0 24.0 41.0 46 34.76327670760406 38.0 34.0 40.0 24.0 41.0 47 34.708433381436265 38.0 33.0 40.0 24.0 41.0 48 34.66085040388496 37.0 33.0 40.0 24.0 41.0 49 34.52603246648264 37.0 33.0 40.0 24.0 41.0 50 34.43528259971378 37.0 33.0 40.0 24.0 41.0 51 34.26488745711155 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 1.0 14 3.0 15 9.0 16 33.0 17 88.0 18 170.0 19 291.0 20 519.0 21 878.0 22 1374.0 23 2007.0 24 3001.0 25 4057.0 26 4864.0 27 5551.0 28 6249.0 29 7327.0 30 9099.0 31 11638.0 32 15679.0 33 22454.0 34 28903.0 35 33470.0 36 42012.0 37 65137.0 38 56507.0 39 12683.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.920103231678475 24.56303180182392 29.368035304755004 15.148829661742603 2 31.026688143326766 23.87861295904864 32.01589193008509 13.078806967539505 3 29.567732316185936 23.594486326592936 33.80298557510943 13.034795782111699 4 27.36208331586858 27.528547391364228 30.44526146236894 14.664107830398256 5 21.559193547421305 36.68287396034802 28.632419776890234 13.125512715340443 6 22.254390639689106 41.033993401316145 26.33874840571726 10.372867553277485 7 38.497811416561376 57.04568181409915 3.6804728058777387 0.7760339634617341 8 89.14570396938977 3.0634180224307346 6.310066286234379 1.4808117219451147 9 83.62484506266354 5.459482763782686 7.915426668981993 3.000245504571774 10 42.162116848200334 33.83621851104471 13.23928312665042 10.762381514104536 11 36.21731346143483 22.13882385346371 25.21661287521781 16.427249809883655 12 33.31976072286126 21.661586917600285 27.868661042017205 17.149991317521245 13 21.41548355418765 31.776075878876426 28.582720070896926 18.225720496038996 14 17.066160488134944 33.573049585935586 30.322209780662625 19.038580145266852 15 16.948797326994125 24.619018820021196 40.9148338652599 17.51734998772477 16 19.4972545403376 21.85170326281564 38.257695969533486 20.393346227313284 17 19.40324425309725 22.19181691346862 29.693478560265383 28.711460273168743 18 22.12834499979042 24.060046825506127 32.228163565923964 21.583444608779484 19 27.196816823649872 24.60824057052867 26.988437333461075 21.206505272360378 20 29.523122339119656 22.75348347035682 27.15999113788375 20.56340305263977 21 24.498062909049537 25.469901738292126 28.32074872906475 21.711286623593587 22 24.33219762519236 23.325628880918305 27.287234361059383 25.05493913282995 23 22.069064627581543 26.704909492643846 28.07973509457914 23.146290785195475 24 20.822679832098824 23.866038334640695 35.70504721472069 19.606234618539787 25 20.300832919169117 26.08366316772753 32.21049921258899 21.40500470051436 26 20.44244714166811 29.983293713286585 27.683335029909646 21.890924115135658 27 19.410130356939696 29.506954964880872 29.54767279629707 21.53524188188236 28 18.323024137290947 27.260887528966542 34.241001658652834 20.175086675089666 29 19.347856026538444 23.763944360280952 33.764662910247125 23.12353670293348 30 20.999023969629288 27.02316724849254 30.678191409735156 21.299617372143015 31 26.456410962677317 26.054921169080796 26.452219421208 21.036448447033887 32 27.170469991557038 25.625886960114492 27.321664880271612 19.88197816805686 33 26.314497344359083 26.85939773537002 26.33126351023634 20.49484141003455 34 21.50350592504326 26.07587887642737 29.129716232642526 23.290898965886843 35 22.540912438698708 25.683071561588715 30.054849314084176 21.7211666856284 36 26.046238690322927 26.89412765040149 26.58724693568379 20.472386723591793 37 21.84870930462327 30.010538732837134 27.857882792524684 20.282869170014912 38 21.650209876469283 30.30185086495452 26.38635234097591 21.661586917600285 39 22.037328670742443 29.62401873020245 26.865685047573994 21.472967551481112 40 24.349562582708096 26.6255696005461 26.777662676718382 22.247205140027422 41 19.92389358275001 25.818099076064506 27.96267132925756 26.29533601192793 42 22.093914480578196 26.17078735112543 25.381280575798037 26.35401759249834 43 22.271156805566367 27.055501996970115 26.77496811434525 23.89837308311827 44 21.00710765674868 27.893211499194624 28.52882882343431 22.570852020622382 45 20.137961593504308 31.150638012490795 25.598342544744707 23.113057849260194 46 20.905911869846648 30.588672059783356 27.300707172925037 21.204708897444956 47 21.74930989263666 26.816284737399926 28.71565181463806 22.718753555325353 48 22.223253474488484 24.096872511272252 30.60543822566062 23.074435788578647 49 20.493943222576842 26.235157452261337 31.344047711717753 21.92685161344407 50 19.84784704466387 30.171613683586525 28.471644221960084 21.508895049789526 51 19.6795865942528 30.08718406256175 27.21597815608103 23.017251187104424 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 85.0 1 255.0 2 425.0 3 1756.5 4 3088.0 5 2344.5 6 1601.0 7 1511.0 8 1421.0 9 1460.0 10 1499.0 11 1473.0 12 1447.0 13 1381.5 14 1316.0 15 1248.5 16 1181.0 17 1130.0 18 1079.0 19 1140.0 20 1201.0 21 1308.0 22 1415.0 23 1556.5 24 1698.0 25 2153.0 26 3456.0 27 4304.0 28 5016.0 29 5728.0 30 6395.0 31 7062.0 32 8262.0 33 9462.0 34 10702.5 35 11943.0 36 13095.0 37 14247.0 38 16138.5 39 18030.0 40 20717.5 41 23405.0 42 24424.5 43 25444.0 44 25173.0 45 24902.0 46 24424.0 47 23946.0 48 23932.5 49 23919.0 50 23100.0 51 22281.0 52 20421.5 53 18562.0 54 17490.0 55 16418.0 56 15937.0 57 15456.0 58 14604.5 59 13753.0 60 12439.5 61 11126.0 62 9751.0 63 8376.0 64 6907.5 65 5439.0 66 4550.5 67 3662.0 68 3126.0 69 2590.0 70 2137.5 71 1685.0 72 1389.0 73 1093.0 74 846.5 75 433.5 76 267.0 77 196.0 78 125.0 79 96.0 80 67.0 81 49.5 82 32.0 83 21.0 84 10.0 85 7.0 86 4.0 87 2.5 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 334006.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.0704733985366 #Duplication Level Percentage of deduplicated Percentage of total 1 62.990546962252495 23.35089395523451 2 9.760350885648174 7.236416557336075 3 6.102393666554068 6.786558662501724 4 4.371010791583269 6.48141757096416 5 3.3752920712348264 6.256183746950105 6 2.5705754291428273 5.717546883898258 7 2.220079916090427 5.760958943043889 8 1.7356728783289483 5.147377221172379 9 1.4353623340076438 4.788860509808258 >10 5.425068124342316 27.61911497606759 >50 0.009633134692965931 0.23063022426632335 >100 0.0024082836732414827 0.17408862089780536 >500 0.001605522448827655 0.4499521278589431 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 762 0.2281396142584265 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 750 0.22454686442758515 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 352 0.10538732837134662 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002993958192367802 0.0 2 0.0 0.0 0.0 0.022754082261995292 0.0 3 0.0 0.0 0.0 0.03293354011604582 0.0 4 0.0 0.0 0.0 0.045508164523990584 0.0 5 0.0 0.0 0.0 0.07933989209774675 0.0 6 0.0 0.0 0.0 0.11975832769471208 0.0 7 0.0 0.0 0.0 0.14430878487212803 0.0 8 0.0 0.0 0.0 0.30478494398304223 0.0 9 0.0 0.0 0.0 0.3823284611653683 0.0 10 0.0 0.0 0.0 0.4952006850176344 0.0 11 0.0 0.0 0.0 0.6155578043508201 0.0 12 0.0 0.0 0.0 0.7098674874104058 0.0 13 0.0 0.0 0.0 0.7532798811997389 0.0 14 0.0 0.0 0.0 0.7679502763423411 0.0 15 0.0 0.0 0.0 0.7963928791698353 0.0 16 0.0 0.0 0.0 0.8589666053903223 0.0 17 0.0 0.0 0.0 0.935611935114938 0.0 18 0.0 0.0 0.0 1.0368077220169698 0.0 19 0.0 0.0 0.0 1.0909983652988269 0.0 20 0.0 0.0 0.0 1.1484823625922889 0.0 21 0.0 0.0 0.0 1.2248282964976678 0.0 22 0.0 0.0 0.0 1.31853918791878 0.0 23 0.0 0.0 0.0 1.4158428291707335 0.0 24 0.0 0.0 0.0 1.4891948048837447 0.0 25 0.0 0.0 0.0 1.5574570516697306 0.0 26 0.0 0.0 0.0 1.6200307778902174 0.0 27 0.0 0.0 0.0 1.6808081291952839 0.0 28 0.0 0.0 0.0 1.7523637299928745 0.0 29 0.0 0.0 0.0 1.8254163098866487 0.0 30 0.0 0.0 0.0 1.9224205553193656 0.0 31 0.0 0.0 0.0 2.00385621815177 0.0 32 0.0 0.0 0.0 2.0927767764650933 0.0 33 0.0 0.0 0.0 2.175410022574445 0.0 34 0.0 0.0 0.0 2.2658275599839524 0.0 35 0.0 0.0 0.0 2.3637299928743793 0.0 36 0.0 0.0 0.0 2.4598360508493857 0.0 37 0.0 0.0 0.0 2.5601336502937073 0.0 38 0.0 0.0 0.0 2.6571378957264242 0.0 39 0.0 0.0 0.0 2.753842745339904 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGG 25 3.8848433E-5 45.000004 2 GCCGATT 25 3.8848433E-5 45.000004 9 GTATAGA 25 3.8848433E-5 45.000004 1 CGCAAAG 25 3.8848433E-5 45.000004 2 TTAGGAC 145 0.0 45.0 5 ACGCCGG 20 7.0260925E-4 45.0 27 GCACCTA 20 7.0260925E-4 45.0 9 ATCGTAG 20 7.0260925E-4 45.0 2 TCGTGCA 20 7.0260925E-4 45.0 1 TACGCAA 20 7.0260925E-4 45.0 1 CCATAAC 20 7.0260925E-4 45.0 29 GCGATTC 35 1.2084638E-7 45.0 9 CTTCTCG 20 7.0260925E-4 45.0 13 CGGTCTA 20 7.0260925E-4 45.0 31 CGTTTTA 430 0.0 43.430237 1 CAAGGAT 190 0.0 42.63158 5 CGTTTTT 650 0.0 42.576923 1 GGACCGA 135 0.0 41.666668 8 GAGGTAT 60 3.6379788E-12 41.249996 6 TAGGCGA 60 3.6379788E-12 41.249996 6 >>END_MODULE