SRR1546392_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546392_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	398689
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2462	0.617523934695966	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1080	0.27088783487881535	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	864	0.21671026790305226	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAGA	35	1.2092642E-7	45.000004	1
GGACTAC	30	2.1619217E-6	45.000004	8
TGGCGAC	30	2.1619217E-6	45.000004	29
ACCGAAT	35	1.2092642E-7	45.000004	25
CATTAGG	70	0.0	45.000004	3
GTGCTTA	30	2.1619217E-6	45.000004	1
AGGCATA	30	2.1619217E-6	45.000004	1
CATAGGC	30	2.1619217E-6	45.000004	4
AGATTAA	35	1.2092642E-7	45.000004	1
TGCTACC	35	1.2092642E-7	45.000004	21
ACCCGAG	30	2.1619217E-6	45.000004	44
GCTACCG	35	1.2092642E-7	45.000004	22
AGGATTC	70	0.0	45.000004	7
GTGACCC	30	2.1619217E-6	45.000004	41
CGATAAG	30	2.1619217E-6	45.000004	2
GTAGTAA	30	2.1619217E-6	45.000004	1
GACTAAG	35	1.2092642E-7	45.000004	2
AAGTACG	20	7.027736E-4	45.0	1
GGCAGTC	20	7.027736E-4	45.0	8
TTAGGCC	45	3.8380676E-10	45.0	5