##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546392_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 398689 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.118656396339002 31.0 31.0 33.0 30.0 34.0 2 31.25370150668817 31.0 31.0 33.0 30.0 34.0 3 31.142930956208975 31.0 31.0 34.0 28.0 34.0 4 35.111821494949695 35.0 35.0 37.0 33.0 37.0 5 32.861726809618524 35.0 35.0 37.0 28.0 37.0 6 34.05086922388127 35.0 35.0 37.0 28.0 37.0 7 15.326414824587586 0.0 0.0 35.0 0.0 37.0 8 24.970538439736234 17.0 17.0 35.0 17.0 37.0 9 32.9181893656459 32.0 32.0 37.0 28.0 39.0 10 35.803814502030406 37.0 35.0 38.0 32.0 39.0 11 36.68557697854719 38.0 35.0 39.0 33.0 39.0 12 36.13613618635076 37.0 35.0 39.0 32.0 39.0 13 35.330483158552155 37.0 35.0 39.0 30.0 39.0 14 36.279368129042936 38.0 35.0 40.0 30.0 41.0 15 36.907062898650324 39.0 35.0 41.0 31.0 41.0 16 37.15036281412329 39.0 35.0 41.0 32.0 41.0 17 37.183388555992266 39.0 35.0 41.0 32.0 41.0 18 37.053297181512406 38.0 35.0 40.0 32.0 41.0 19 36.91455495386128 38.0 35.0 40.0 32.0 41.0 20 36.9885449560936 38.0 35.0 40.0 32.0 41.0 21 36.7795499750432 38.0 35.0 40.0 32.0 41.0 22 36.819992525502336 38.0 35.0 40.0 32.0 41.0 23 36.83243580836191 38.0 35.0 40.0 32.0 41.0 24 36.658076846865605 38.0 35.0 40.0 32.0 41.0 25 36.42945754711066 38.0 35.0 40.0 31.0 41.0 26 36.2729220018611 38.0 35.0 40.0 31.0 41.0 27 36.09401814446849 37.0 34.0 40.0 31.0 41.0 28 36.113411706869265 37.0 35.0 40.0 31.0 41.0 29 36.231034716282615 38.0 35.0 40.0 31.0 41.0 30 36.025164978216104 37.0 35.0 40.0 31.0 41.0 31 35.790942313432275 37.0 34.0 40.0 30.0 41.0 32 35.54921505233403 37.0 34.0 40.0 30.0 41.0 33 35.289461209112865 37.0 34.0 40.0 29.0 41.0 34 35.110168577512795 37.0 34.0 40.0 27.0 41.0 35 34.89373170566532 37.0 34.0 40.0 26.0 41.0 36 34.653225948044714 37.0 34.0 40.0 24.0 41.0 37 34.42824356829509 36.0 33.0 40.0 23.0 41.0 38 34.44982429914043 37.0 33.0 40.0 24.0 41.0 39 34.38059489978404 36.0 33.0 40.0 23.0 41.0 40 34.205638981762725 36.0 33.0 40.0 23.0 41.0 41 34.15875030412176 36.0 33.0 40.0 23.0 41.0 42 34.095457863146464 36.0 33.0 40.0 23.0 41.0 43 33.96617915217124 36.0 33.0 40.0 23.0 41.0 44 33.73303502228554 35.0 33.0 40.0 22.0 41.0 45 33.641462392993034 35.0 33.0 40.0 22.0 41.0 46 33.668867212288276 35.0 33.0 40.0 23.0 41.0 47 33.66944410304774 35.0 33.0 40.0 23.0 41.0 48 33.7045792585198 35.0 33.0 40.0 23.0 41.0 49 33.67189212644442 36.0 33.0 40.0 22.0 41.0 50 33.48329148785143 35.0 33.0 40.0 21.0 41.0 51 33.254313512537344 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 8.0 15 8.0 16 47.0 17 108.0 18 280.0 19 494.0 20 902.0 21 1390.0 22 2321.0 23 3543.0 24 5129.0 25 6893.0 26 8196.0 27 8553.0 28 8705.0 29 9766.0 30 11723.0 31 15670.0 32 21592.0 33 35177.0 34 44912.0 35 40717.0 36 39101.0 37 61795.0 38 62370.0 39 9286.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.694044731607843 22.95021934389963 30.92585950452608 17.42987641996644 2 31.154609231757085 24.957297542696185 31.363042371372174 12.525050854174557 3 26.115593858872455 24.45841244679437 35.18682481834212 14.239168875991059 4 25.084213509778298 27.755217726097285 32.81429886452849 14.346269899595926 5 20.539568435547505 35.54424626714056 31.43904145837984 12.4771438389321 6 21.380574834018496 37.68551427302986 30.210264140721215 10.723646752230435 7 36.85052760422284 57.2255567622884 5.233151654547781 0.6907639789409791 8 87.6021159349769 2.7908971654597945 8.23774922307864 1.3692376764846785 9 85.31361537438956 3.5421092631098423 9.388019233036276 1.7562561294643193 10 66.49042235928255 14.016438878424035 12.377818299476534 7.115320462816882 11 62.891627308503615 13.712442530393364 16.276094901038153 7.119835260064862 12 54.05892813696892 19.318064957899516 18.623789469987887 7.9992174351436836 13 19.030873688514106 52.57481395273007 19.94988575054742 8.444426608208403 14 10.499161000178084 53.97716014236661 26.375947166839314 9.147731690615995 15 8.592411629114423 19.15603390111089 63.06920933359085 9.182345136183843 16 9.476308601441223 12.193213256448008 60.53665889954325 17.793819242567515 17 11.150545914233902 13.441554695514549 29.84707378432814 45.56082560592342 18 19.717122870207106 19.79638264411609 40.184203727717595 20.302290757959213 19 30.893503457582227 20.211743990930273 26.740140811509722 22.154611739977778 20 34.91869602622595 18.937567878722515 25.4265856344168 20.71715046063473 21 19.774561124084187 27.58039474377271 30.20750509795856 22.43753903418454 22 21.350225363629292 23.932187745335337 25.818620528783086 28.89896636225228 23 15.3350104969036 32.012169886803996 24.867503241875248 27.785316374417153 24 17.56632362568318 20.666484402629617 46.98348838317586 14.783703588511345 25 12.43224668852163 22.26271605185997 44.594157350716976 20.710879908901425 26 12.388352826388488 38.21249144069688 30.193459062075956 19.205696670838673 27 13.785180930499713 38.97147902249623 31.690365171850743 15.552974875153314 28 10.740451830875696 29.133234175008592 46.30250646493884 13.823807529176877 29 10.227771521160605 21.895261720288246 46.668957508233234 21.208009250317915 30 14.894566943156196 32.133567768360805 35.62676672795086 17.345098560532143 31 32.550684869660316 25.603164371226693 24.662330789161476 17.183819969951518 32 33.39971757434993 26.255301751490514 26.824417026805353 13.520563647354203 33 30.50171938528527 28.16054619013818 24.130086358038472 17.207648066538077 34 17.79783239567683 28.616791534253515 28.79663095796473 24.788745112104923 35 18.82294219303768 24.865747487389918 33.29913792454771 23.012172395024695 36 34.43009463516676 21.429485137538283 27.48357742501047 16.656842802284487 37 18.646363456227785 33.139865910521735 31.605587312416443 16.608183320834033 38 18.974438722914353 34.74337139976272 22.92438467075841 23.357805206564517 39 19.07878070375656 33.10249342219123 28.899468006390943 18.91925786766126 40 23.30488174993541 25.295154870086712 24.213860929195437 27.18610245078244 41 14.800508667156606 22.143575568927158 28.462285139544857 34.59363062437138 42 22.049015648788906 23.083155040645718 24.949020414408224 29.918808896157156 43 22.674315067634172 24.87126557291523 26.23272776525061 26.221691594199992 44 17.46022589035564 32.34776981557053 28.69128568884519 21.500718605228634 45 14.625434862762704 43.49355011048712 20.09661666110678 21.784398365643394 46 22.772386496743074 34.9703653725084 25.260541424518863 16.996706706229666 47 22.228604250430788 28.581927266616336 25.630253154714577 23.5592153282383 48 24.919172588157686 22.596560226141175 31.06280835438148 21.42145883131965 49 21.025912427982714 21.028169826606703 34.587861716776736 23.358056028633847 50 18.706811574936854 36.09354659897815 25.359114497766427 19.840527328318565 51 16.29114422519809 38.75226053389986 21.053001211470594 23.90359402943146 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 202.0 1 269.0 2 336.0 3 1924.0 4 3512.0 5 2887.5 6 2263.0 7 2494.5 8 2726.0 9 2897.5 10 3069.0 11 3185.0 12 3301.0 13 3145.5 14 2990.0 15 2804.0 16 2618.0 17 2493.5 18 2369.0 19 2113.5 20 1858.0 21 1671.0 22 1484.0 23 1546.5 24 1609.0 25 1599.0 26 1949.5 27 2310.0 28 2703.0 29 3096.0 30 3922.0 31 4748.0 32 5426.0 33 6104.0 34 6379.5 35 6655.0 36 8687.0 37 10719.0 38 18260.0 39 25801.0 40 35902.5 41 46004.0 42 50031.5 43 54059.0 44 51645.0 45 49231.0 46 43655.5 47 38080.0 48 32477.5 49 26875.0 50 25602.5 51 24330.0 52 21715.0 53 19100.0 54 16460.0 55 13820.0 56 12234.0 57 10648.0 58 9173.0 59 7698.0 60 6841.0 61 5984.0 62 5401.5 63 4819.0 64 3979.5 65 3140.0 66 2629.5 67 2119.0 68 1757.5 69 1396.0 70 1112.0 71 828.0 72 699.0 73 570.0 74 454.0 75 252.0 76 166.0 77 112.5 78 59.0 79 43.5 80 28.0 81 18.0 82 8.0 83 7.0 84 6.0 85 4.5 86 3.0 87 2.5 88 2.0 89 9.0 90 16.0 91 8.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 398689.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.627912984807708 #Duplication Level Percentage of deduplicated Percentage of total 1 76.16028376655767 17.2334827396793 2 5.043507177298675 2.282480830923351 3 2.2645901457628996 1.537288462937277 4 1.517486005653162 1.3735016516633265 5 1.1239815995122762 1.2716678915144386 6 0.8113950008313473 1.1016105285071822 7 0.6805963531563488 1.0780332539899522 8 0.6739455744610099 1.219998545231998 9 0.5586654104084687 1.1377289064910243 >10 10.222246854735909 56.7680573078264 >50 0.8900958820595245 12.570700470793025 >100 0.04988084021504184 1.3203273729648923 >500 0.0011084631158898186 0.21671026790305226 >1k 0.0022169262317796373 0.8884117695747814 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2462 0.617523934695966 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1080 0.27088783487881535 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 864 0.21671026790305226 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010283704842621692 0.0 2 0.0 0.0 0.0 0.04088399730115454 0.0 3 0.0 0.0 0.0 0.0516693462824407 0.0 4 0.0 0.0 0.0 0.0792597739089867 0.0 5 0.0 0.0 0.0 0.12917336570610174 0.0 6 0.0 0.0 0.0 0.1861099754445194 0.0 7 0.0 0.0 0.0 0.2252382182603483 0.0 8 0.0 0.0 0.0 0.5016441386644728 0.0 9 0.0 0.0 0.0 0.6012205001893707 0.0 10 0.0 0.0 0.0 0.7707762190579625 0.0 11 0.0 0.0 0.0 0.9408335820652187 0.0 12 0.0 0.0 0.0 1.0782840760592842 0.0 13 0.0 0.0 0.0 1.1465076789176527 0.0 14 0.0 0.0 0.0 1.1693324872268862 0.0 15 0.0 0.0 0.0 1.2044475769333993 0.0 16 0.0 0.0 0.0 1.2894762584370274 0.0 17 0.0 0.0 0.0 1.3827820682286194 0.0 18 0.0 0.0 0.0 1.542555726393254 0.0 19 0.0 0.0 0.0 1.6092743968356287 0.0 20 0.0 0.0 0.0 1.678250465901994 0.0 21 0.0 0.0 0.0 1.7853514895068587 0.0 22 0.0 0.0 0.0 1.8698785268718223 0.0 23 0.0 0.0 0.0 1.9757254401300262 0.0 24 0.0 0.0 0.0 2.0401867119484107 0.0 25 0.0 0.0 0.0 2.089347837537529 0.0 26 0.0 0.0 0.0 2.1593271948812234 0.0 27 0.0 0.0 0.0 2.2112473632329963 0.0 28 0.0 0.0 0.0 2.272698770219394 0.0 29 0.0 0.0 0.0 2.336407575829782 0.0 30 0.0 0.0 0.0 2.434729827008019 0.0 31 0.0 0.0 0.0 2.5242733057596274 0.0 32 0.0 0.0 0.0 2.5987674603513016 0.0 33 0.0 0.0 0.0 2.66924846183366 0.0 34 0.0 0.0 0.0 2.7495115240199755 0.0 35 0.0 0.0 0.0 2.8821963986967285 0.0 36 0.0 0.0 0.0 2.97098741124034 0.0 37 0.0 0.0 0.0 3.0605308899919486 0.0 38 0.0 0.0 0.0 3.1305102473356428 0.0 39 0.0 0.0 0.0 3.2027470033033265 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAAGA 35 1.2092642E-7 45.000004 1 GGACTAC 30 2.1619217E-6 45.000004 8 TGGCGAC 30 2.1619217E-6 45.000004 29 ACCGAAT 35 1.2092642E-7 45.000004 25 CATTAGG 70 0.0 45.000004 3 GTGCTTA 30 2.1619217E-6 45.000004 1 AGGCATA 30 2.1619217E-6 45.000004 1 CATAGGC 30 2.1619217E-6 45.000004 4 AGATTAA 35 1.2092642E-7 45.000004 1 TGCTACC 35 1.2092642E-7 45.000004 21 ACCCGAG 30 2.1619217E-6 45.000004 44 GCTACCG 35 1.2092642E-7 45.000004 22 AGGATTC 70 0.0 45.000004 7 GTGACCC 30 2.1619217E-6 45.000004 41 CGATAAG 30 2.1619217E-6 45.000004 2 GTAGTAA 30 2.1619217E-6 45.000004 1 GACTAAG 35 1.2092642E-7 45.000004 2 AAGTACG 20 7.027736E-4 45.0 1 GGCAGTC 20 7.027736E-4 45.0 8 TTAGGCC 45 3.8380676E-10 45.0 5 >>END_MODULE