##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546391_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1203079 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56915298164127 31.0 31.0 33.0 30.0 34.0 2 31.759176246946378 31.0 31.0 34.0 30.0 34.0 3 31.831365188819685 31.0 31.0 34.0 30.0 34.0 4 35.71937004968086 37.0 35.0 37.0 35.0 37.0 5 27.246181672192765 35.0 26.0 37.0 0.0 37.0 6 31.426039354024134 36.0 28.0 37.0 17.0 37.0 7 14.81917147585487 0.0 0.0 32.0 0.0 37.0 8 25.004088675805995 17.0 17.0 35.0 17.0 37.0 9 33.21515129097923 32.0 32.0 37.0 28.0 39.0 10 36.1220659657429 37.0 35.0 39.0 32.0 39.0 11 37.09103142852631 39.0 37.0 39.0 34.0 39.0 12 36.990461972987646 39.0 35.0 39.0 33.0 39.0 13 36.4475608002467 39.0 35.0 39.0 33.0 39.0 14 37.76433218433702 40.0 36.0 41.0 33.0 41.0 15 38.05363820663481 40.0 36.0 41.0 33.0 41.0 16 38.14443773019062 40.0 36.0 41.0 34.0 41.0 17 38.18137129814418 40.0 36.0 41.0 34.0 41.0 18 38.14511349628744 40.0 36.0 41.0 34.0 41.0 19 38.06906445877619 40.0 36.0 41.0 34.0 41.0 20 38.09618071631206 40.0 36.0 41.0 34.0 41.0 21 37.95304547747904 40.0 36.0 41.0 34.0 41.0 22 37.87088295947315 40.0 35.0 41.0 34.0 41.0 23 37.76713249919581 40.0 35.0 41.0 34.0 41.0 24 37.668129856809074 39.0 35.0 41.0 33.0 41.0 25 37.48476118359642 39.0 35.0 41.0 33.0 41.0 26 37.23057089351572 39.0 35.0 40.0 33.0 41.0 27 37.024243628223914 39.0 35.0 40.0 33.0 41.0 28 37.07002532668262 39.0 35.0 40.0 33.0 41.0 29 37.062040813612406 39.0 35.0 40.0 33.0 41.0 30 36.88214074054987 38.0 35.0 40.0 32.0 41.0 31 36.697387287119135 38.0 35.0 40.0 32.0 41.0 32 36.4788131120234 38.0 35.0 40.0 31.0 41.0 33 36.27659280895103 38.0 35.0 40.0 31.0 41.0 34 36.07091803613894 38.0 35.0 40.0 30.0 41.0 35 35.94329383190963 38.0 35.0 40.0 30.0 41.0 36 35.71794537183344 38.0 35.0 40.0 30.0 41.0 37 35.53983902968965 38.0 35.0 40.0 29.0 41.0 38 35.38603449981257 38.0 34.0 40.0 29.0 41.0 39 35.32124989298292 38.0 34.0 40.0 29.0 41.0 40 35.10360084416734 38.0 34.0 40.0 28.0 41.0 41 34.96539046895507 37.0 34.0 40.0 27.0 40.0 42 34.96987064024889 37.0 34.0 40.0 27.0 41.0 43 34.82773949175407 37.0 34.0 40.0 27.0 41.0 44 34.623098732502186 37.0 34.0 40.0 27.0 40.0 45 34.39157029588248 36.0 34.0 40.0 26.0 40.0 46 34.362765869905466 36.0 34.0 39.0 26.0 40.0 47 34.24362573031364 36.0 33.0 39.0 26.0 40.0 48 34.20787246722784 36.0 33.0 39.0 26.0 40.0 49 34.05675936492948 36.0 33.0 39.0 26.0 40.0 50 34.13178935049153 36.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 2.0 13 0.0 14 11.0 15 22.0 16 41.0 17 128.0 18 317.0 19 738.0 20 1333.0 21 2324.0 22 3663.0 23 5907.0 24 9032.0 25 13623.0 26 17305.0 27 19169.0 28 20221.0 29 22975.0 30 28253.0 31 38708.0 32 55708.0 33 106275.0 34 104749.0 35 127142.0 36 163771.0 37 300030.0 38 131120.0 39 30510.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.739128519407288 23.36130877523421 30.062863702217395 15.836699003141108 2 30.889575830016152 24.59156879972138 31.377241228547753 13.141614141714717 3 29.015883412477482 23.405778007927992 34.04298470840236 13.535353871192166 4 26.297857414184772 26.41331117906638 32.74298695264401 14.545844454104842 5 17.651958017719537 47.332552558892644 23.908986857887136 11.106502565500687 6 21.577386023694203 39.58734214461395 27.893097627005375 10.942174204686475 7 38.679338597049735 56.47002399676164 3.845466507186976 1.005170899001645 8 87.89173445800319 3.2363626993738563 7.394360636333939 1.47754220628903 9 83.55120486684582 5.021615371891621 8.794767425913012 2.632412335349549 10 54.53731633583497 21.950595098077518 13.581069904802595 9.93101866128492 11 48.09127247670352 18.000064833647667 20.518270205032255 13.390392484616553 12 42.26006770960178 19.89171118438606 24.510942340444807 13.337278765567348 13 21.03427954440232 38.70294469440494 25.173658587673792 15.089117173518945 14 15.389679314492232 39.804784224477366 29.239808857107473 15.565727603922936 15 14.456989108778393 21.571484499355403 48.90618155582468 15.065344836041522 16 16.49376308621462 16.6780402616952 46.69518793030217 20.133008721788013 17 17.24998940219221 16.876780327808895 30.28146946293635 35.59176080706254 18 22.47499956361968 21.163448119367057 34.40006849093035 21.961483826082908 19 29.257264069940543 22.582473802634738 25.935121467501304 22.22514065992341 20 32.12033457486998 21.35312809881978 25.8020462496644 20.72449107664584 21 24.064255132040373 25.633811245978027 27.805156602351133 22.496777019630464 22 24.63761731357625 24.27646064805387 25.939859310984563 25.146062727385317 23 20.76779662848408 28.514752564046088 26.244411214891127 24.473039592578708 24 21.754681114041556 21.735231019741846 38.62946656038381 17.880621305832783 25 18.742410099419903 24.041729595479598 35.288123223828194 21.9277370812723 26 18.599111114066492 31.528270379584384 28.254254292527758 21.61836421382137 27 19.701116884261133 30.453029269067116 30.322364533002403 19.523489313669344 28 17.144925644949335 26.338669364189716 38.808174691770034 17.708230299090914 29 17.251153083047747 23.701519185356908 37.04179027312421 22.00553745847114 30 19.674601584767085 28.096824896785666 31.428858786496978 20.79971473195027 31 28.90026340747366 25.872448941424466 25.249297843283774 19.977989807818105 32 30.76713998000131 25.248716002856003 26.050408992260692 17.93373502488199 33 28.21344234252281 26.741053580022594 25.158447616490687 19.887056460963908 34 20.64045669486376 26.86623239205406 29.50670737333126 22.98660353975092 35 22.65703249745029 24.305968269747872 30.10982653674447 22.927172696057365 36 29.576278864480223 25.20848589327883 25.128856874735572 20.086378367505375 37 22.543906094279762 30.595247693626103 27.7585262480685 19.10231996402564 38 22.25764060381737 31.01026615874768 23.909069977948246 22.8230232594867 39 22.527282082057788 30.14831112503834 26.45187888742136 20.872527905482517 40 24.544107244827646 25.733472199248762 24.7753472548353 24.94707330108829 41 18.007213158903117 24.303308427792356 27.56892938867689 30.120549024627643 42 22.758688332187663 25.66331886767203 24.072733378273583 27.50525942186673 43 23.459141087160525 26.30683438078464 25.849341564435917 24.384682967618918 44 21.261363551354485 29.537295555819693 26.936884443997442 22.264456448828383 45 18.10612603162386 34.68101429748171 23.396634801205906 23.816224869688522 46 22.544820414951968 31.8451240525352 25.68468072337727 19.92537480913556 47 23.288080001396416 25.67537127653296 28.007470831092558 23.029077890978066 48 23.87507387295431 22.33968010413281 30.70845721685775 23.07678880605513 49 21.50465597022307 23.65405763046317 31.35878857498136 23.482497824332402 50 19.69064375656129 31.37358394585892 27.28765110188109 21.648121195698703 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 316.0 1 913.5 2 1511.0 3 6882.0 4 12253.0 5 9352.0 6 6451.0 7 6497.5 8 6544.0 9 6772.0 10 7000.0 11 7012.0 12 7024.0 13 6629.5 14 6235.0 15 5801.5 16 5368.0 17 5172.0 18 4976.0 19 4623.5 20 4271.0 21 4190.5 22 4110.0 23 4895.5 24 5681.0 25 6966.5 26 8252.0 27 9687.0 28 11122.0 29 14014.0 30 16906.0 31 19904.0 32 22902.0 33 25171.5 34 27441.0 35 29850.5 36 32260.0 37 38273.0 38 44286.0 39 58662.5 40 73039.0 41 89765.0 42 106491.0 43 107749.0 44 109007.0 45 103318.5 46 97630.0 47 91747.0 48 85864.0 49 85712.5 50 85561.0 51 82816.0 52 80071.0 53 72548.0 54 65025.0 55 61295.0 56 57565.0 57 55481.0 58 53397.0 59 49671.0 60 45945.0 61 40862.0 62 35779.0 63 31042.0 64 26305.0 65 22138.5 66 17972.0 67 14472.5 68 10973.0 69 8846.5 70 6720.0 71 5543.0 72 4366.0 73 3665.0 74 2964.0 75 2437.0 76 1910.0 77 1319.0 78 728.0 79 550.0 80 372.0 81 325.0 82 278.0 83 211.0 84 144.0 85 94.5 86 45.0 87 29.0 88 13.0 89 6.5 90 0.0 91 1.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1203079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.322705782125574 #Duplication Level Percentage of deduplicated Percentage of total 1 73.63902697960376 12.75627198449683 2 5.407881865863528 1.8735829293369235 3 2.123441673891211 1.1035126608696504 4 1.3276355879779675 0.919929627056865 5 1.048026492106057 0.9077327287313187 6 0.8634642707103889 0.8974522508936217 7 0.7659495109032882 0.9287822614938454 8 0.6599964072198045 0.914633886362289 9 0.6796173831710244 1.0595530775780782 >10 10.916460329964513 45.01215016737533 >50 2.3416477125448503 27.62078571468824 >100 0.22336941213508898 5.009057940760748 >500 0.001492445960813512 0.1544297949220346 >1k 0.0019899279477513495 0.8421249754342198 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3665 0.3046350239676696 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3088 0.25667474870727525 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1573 0.13074785612582382 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1446 0.12019160836487046 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005070323727702004 0.0 2 0.0 0.0 0.0 0.019948814666368542 0.0 3 0.0 0.0 0.0 0.0294245016328936 0.0 4 0.0 0.0 0.0 0.04313931171602197 0.0 5 0.0 0.0 0.0 0.06782596986565305 0.0 6 0.0 0.0 0.0 0.10980160072613686 0.0 7 0.0 0.0 0.0 0.13673250052573438 0.0 8 0.0 0.0 0.0 0.3111183887342394 0.0 9 0.0 0.0 0.0 0.3855108434275721 0.0 10 0.0 0.0 0.0 0.5097753347868261 0.0 11 0.0 0.0 0.0 0.633541105779421 0.0 12 0.0 0.0 0.0 0.7328695788057144 0.0 13 0.0 0.0 0.0 0.7739308889939895 0.0 14 0.0 0.0 0.0 0.789557460482645 0.0 15 0.0 0.0 0.0 0.8144103587544957 0.0 16 0.0 0.0 0.0 0.8778309653813258 0.0 17 0.0 0.0 0.0 0.9470699762858465 0.0 18 0.0 0.0 0.0 1.0542948551175775 0.0 19 0.0 0.0 0.0 1.1038344115390593 0.0 20 0.0 0.0 0.0 1.1588598919937927 0.0 21 0.0 0.0 0.0 1.2275170624705443 0.0 22 0.0 0.0 0.0 1.2963404730695158 0.0 23 0.0 0.0 0.0 1.3788786937516155 0.0 24 0.0 0.0 0.0 1.441468099767347 0.0 25 0.0 0.0 0.0 1.4975741410165084 0.0 26 0.0 0.0 0.0 1.54736305762132 0.0 27 0.0 0.0 0.0 1.5919154103762096 0.0 28 8.312006110986893E-5 0.0 0.0 1.639293845208835 0.0 29 8.312006110986893E-5 0.0 0.0 1.696979167619084 0.0 30 8.312006110986893E-5 0.0 0.0 1.767381859379143 0.0 31 8.312006110986893E-5 0.0 0.0 1.8407768733391572 0.0 32 8.312006110986893E-5 0.0 0.0 1.9079378827159315 0.0 33 8.312006110986893E-5 0.0 0.0 1.9752651322149253 0.0 34 8.312006110986893E-5 0.0 0.0 2.0499900671526974 0.0 35 8.312006110986893E-5 0.0 0.0 2.1399259732735754 0.0 36 8.312006110986893E-5 0.0 0.0 2.220718672672368 0.0 37 8.312006110986893E-5 0.0 0.0 2.2989346501767547 0.0 38 8.312006110986893E-5 0.0 0.0 2.3769843875589216 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTA 20 7.856628E-4 44.0 1 ATCTCGG 20 7.856628E-4 44.0 18 ATCTCGC 30 2.527815E-6 44.0 17 CGTATTG 20 7.856628E-4 44.0 18 TCCGCAT 20 7.856628E-4 44.0 41 ACGTTAG 55 1.8189894E-12 44.0 2 GCGAAAC 20 7.856628E-4 44.0 25 CAGTTCG 20 7.856628E-4 44.0 35 CGTGAAT 20 7.856628E-4 44.0 33 CGTTGAC 20 7.856628E-4 44.0 28 CGACCCA 30 2.527815E-6 44.0 10 AAGCGTA 20 7.856628E-4 44.0 15 CGACAGT 25 4.4429646E-5 44.0 16 CTACGTC 25 4.4429646E-5 44.0 29 TACGACT 25 4.4429646E-5 44.0 41 GCTTATA 30 2.527815E-6 44.0 1 TCGCTAA 25 4.4429646E-5 44.0 1 GGTATCG 25 4.4429646E-5 44.0 24 ACTCGTT 30 2.527815E-6 44.0 23 TCGTATA 35 1.4461511E-7 44.0 1 >>END_MODULE