SRR1546390_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546390_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	453685
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1131	0.24929190958484412	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	983	0.21667015660645603	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	843	0.18581174162689973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	40	6.7993824E-9	45.000004	5
TCACCGG	20	7.028766E-4	45.000004	42
CCGATTA	20	7.028766E-4	45.000004	12
ACTCTAT	20	7.028766E-4	45.000004	11
GCAAACG	20	7.028766E-4	45.000004	1
GCGATAT	40	6.7993824E-9	45.000004	9
CCGGTTG	20	7.028766E-4	45.000004	20
GTGCGTA	20	7.028766E-4	45.000004	19
CATCACG	20	7.028766E-4	45.000004	40
CGCATTA	25	3.8870603E-5	45.0	31
GCGTTAG	25	3.8870603E-5	45.0	2
TATACGG	30	2.1625856E-6	44.999996	2
CGTTTTA	780	0.0	44.71154	1
AATCGTT	115	0.0	43.043476	22
GGCGATA	170	0.0	42.352943	8
TTAGGCG	70	0.0	41.785713	5
TAGGCGA	135	0.0	41.666664	6
CGTTTTT	915	0.0	41.311478	1
GTATTAG	60	3.6379788E-12	41.249996	2
ATAGGCC	60	3.6379788E-12	41.249996	5