##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546390_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 453685 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.061959288933952 31.0 31.0 33.0 30.0 33.0 2 31.21188048976713 31.0 31.0 33.0 30.0 34.0 3 31.19147426077565 31.0 31.0 34.0 28.0 34.0 4 35.14085103100169 35.0 35.0 37.0 33.0 37.0 5 32.92290245434608 35.0 35.0 37.0 28.0 37.0 6 34.08033327088178 35.0 35.0 37.0 29.0 37.0 7 14.964184401071227 0.0 0.0 35.0 0.0 37.0 8 24.733169489844276 17.0 17.0 35.0 17.0 37.0 9 32.67354882793127 32.0 32.0 37.0 27.0 39.0 10 35.565844142962625 37.0 35.0 37.0 32.0 39.0 11 36.531935153245094 37.0 35.0 39.0 33.0 39.0 12 36.32629026747633 37.0 35.0 39.0 32.0 39.0 13 35.92485975952478 37.0 35.0 39.0 31.0 39.0 14 36.98274353350893 39.0 35.0 40.0 31.0 41.0 15 37.34072539316927 39.0 35.0 41.0 32.0 41.0 16 37.43239913155603 39.0 35.0 41.0 32.0 41.0 17 37.412643133451624 39.0 35.0 41.0 32.0 41.0 18 37.31226952621312 39.0 35.0 41.0 32.0 41.0 19 37.23212360999372 39.0 35.0 40.0 32.0 41.0 20 37.343070632707715 39.0 35.0 41.0 32.0 41.0 21 37.20430254471715 39.0 35.0 40.0 32.0 41.0 22 37.24952775604219 39.0 35.0 41.0 32.0 41.0 23 37.220886738596164 39.0 35.0 41.0 32.0 41.0 24 37.09246724048624 39.0 35.0 41.0 32.0 41.0 25 36.830891477567036 38.0 35.0 40.0 31.0 41.0 26 36.694741946504735 38.0 35.0 40.0 31.0 41.0 27 36.61363941942096 38.0 35.0 40.0 31.0 41.0 28 36.5470227139976 38.0 35.0 40.0 31.0 41.0 29 36.58785721370555 38.0 35.0 40.0 31.0 41.0 30 36.35337734331089 38.0 35.0 40.0 31.0 41.0 31 36.21412433737064 38.0 35.0 40.0 30.0 41.0 32 36.1062565436371 38.0 35.0 40.0 30.0 41.0 33 35.92146092553203 38.0 35.0 40.0 30.0 41.0 34 35.7826399374015 38.0 35.0 40.0 29.0 41.0 35 35.630272105094946 38.0 34.0 40.0 29.0 41.0 36 35.38636719309653 38.0 34.0 40.0 27.0 41.0 37 35.22497107023596 38.0 34.0 40.0 27.0 41.0 38 35.17462556619681 38.0 34.0 40.0 27.0 41.0 39 35.06151404608925 38.0 34.0 40.0 26.0 41.0 40 34.918002578881826 38.0 34.0 40.0 25.0 41.0 41 34.80786889581979 37.0 34.0 40.0 25.0 41.0 42 34.78023959355059 37.0 34.0 40.0 25.0 41.0 43 34.680685938481545 37.0 33.0 40.0 24.0 41.0 44 34.48425449375668 37.0 33.0 40.0 24.0 41.0 45 34.3987921134708 37.0 33.0 40.0 24.0 41.0 46 34.38480002645007 37.0 33.0 40.0 24.0 41.0 47 34.33428480112854 37.0 33.0 40.0 24.0 41.0 48 34.3053638537752 36.0 33.0 40.0 24.0 41.0 49 34.21790449320564 36.0 33.0 40.0 24.0 41.0 50 34.08122816491618 36.0 33.0 40.0 24.0 41.0 51 33.90931813923758 36.0 33.0 40.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 5.0 15 15.0 16 42.0 17 100.0 18 252.0 19 488.0 20 753.0 21 1291.0 22 2088.0 23 3017.0 24 4299.0 25 6060.0 26 7346.0 27 8152.0 28 8861.0 29 10417.0 30 12757.0 31 17034.0 32 22848.0 33 35509.0 34 44859.0 35 46545.0 36 54023.0 37 81560.0 38 71888.0 39 13474.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.185040281252412 24.151779318249446 30.242789600714154 15.420390799783993 2 30.448659312077766 24.526047808501495 31.871452659885165 13.153840219535581 3 29.727013236055853 22.908626029073034 33.718328796411605 13.646031938459505 4 26.703329402559046 27.029987766842634 31.494539162634865 14.772143667963455 5 21.478558912020453 35.80303514553049 28.941886992076 13.776518950373056 6 21.70051908262341 40.183387151878506 27.422550888832557 10.693542876665528 7 37.28512073354861 57.93953954836506 4.001454753849036 0.7738849642373012 8 88.30950990224495 3.495376748184313 6.76967499476509 1.425438354805647 9 83.81255717072418 5.254306402019022 8.229939275047665 2.703197152209132 10 54.805426672691404 22.284624794736434 13.087935461829241 9.822013070742916 11 48.65336081201715 18.19720731344435 19.928584811047312 13.22084706349119 12 42.706062576457235 20.246646902586598 23.90028323616606 13.147007284790108 13 21.134046750498694 39.53668294080695 24.336488973627077 14.992781335067281 14 15.353383955828384 40.685277229796 28.648732049770214 15.3126067646054 15 14.344975037746455 21.964578947948464 48.67231669550459 15.018129318800488 16 16.436293904360955 17.146257866140605 46.42295866074479 19.99448956875365 17 17.071095583940398 17.14317202464265 30.026560278607406 35.75917211280955 18 22.198221232793678 21.36989320784245 34.44173821043235 21.990147348931526 19 29.74332411254505 22.702095065959863 25.504700397853135 22.049880423641955 20 32.657019738364724 21.583477522950947 25.32395825297288 20.43554448571145 21 23.97125759061904 26.348237213044296 27.38397787010812 22.296527326228553 22 24.51150027001113 24.63383184368009 25.237113856530414 25.617554029778372 23 20.69894309928695 28.91808192909177 25.767437759679073 24.615537211942208 24 21.2676196039102 22.02585494340787 38.95610390469158 17.750421547990346 25 18.51945733273086 24.426860046067205 35.364625235570934 21.689057385631 26 18.35921399208702 32.327495949833036 27.8825616892778 21.430728368802143 27 19.468794427851925 31.550965978597485 29.77109668602665 19.209142907523944 28 16.974332411254505 26.985243065122276 38.532461950472246 17.507962573150976 29 17.049274276204855 24.182417315979148 36.737383867661485 22.030924540154512 30 19.594432260268686 28.98795419729548 30.91285804027023 20.5047555021656 31 29.355830587301764 26.286740800335036 24.738309620110872 19.619118992252332 32 31.319087031751103 25.33960787771251 25.69734507422551 17.643960016310878 33 28.9390215678279 26.81794637248311 24.63779935417746 19.605232705511533 34 20.634801679579443 26.951298808644765 29.011098008530144 23.402801503245644 35 22.70363798670884 24.27631506441694 30.19055071249876 22.82949623637546 36 29.956688010403692 25.542391747578165 24.751755072351962 19.749165169666178 37 22.467350694865377 31.4742607756483 27.44040468607073 18.617983843415587 38 22.032026626403784 31.746255661968103 23.560399836891236 22.661317874736877 39 22.596294786029954 30.780387273107994 26.242436933114387 20.380881007747668 40 24.853808259034352 25.810859957900306 24.524504887752517 24.810826895312825 41 17.964005863098844 24.401291645084143 27.332841068141995 30.30186142367502 42 22.493580347598 25.52277461234116 24.00432017809714 27.979324861963693 43 23.126177854678907 26.149641270925862 25.849432976624755 24.87474789777048 44 20.859627274430498 29.626723387372294 27.282365517925435 22.231283820271774 45 18.002578881823293 35.479462622744855 23.118683668183873 23.399274827247982 46 22.34149244519876 32.522565215953804 25.3032390314866 19.832703307360834 47 22.98378831127324 26.109745748702295 27.681761574660836 23.224704365363632 48 23.49295215843592 22.658011615989068 31.06031718042254 22.788719045152472 49 21.454753849036226 24.048403628067934 31.681893825010743 22.814948697885097 50 19.62507025799839 32.3089809008453 26.940718780651775 21.125230060504535 51 19.281880599975754 32.5532032136835 24.491883134774127 23.673033051566616 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 138.0 1 361.5 2 585.0 3 2230.0 4 3875.0 5 2956.5 6 2038.0 7 2138.5 8 2239.0 9 2238.5 10 2238.0 11 2217.0 12 2196.0 13 2101.0 14 2006.0 15 1945.0 16 1884.0 17 1782.0 18 1680.0 19 1640.0 20 1600.0 21 1496.0 22 1392.0 23 1661.5 24 1931.0 25 2410.0 26 3256.0 27 3623.0 28 4575.5 29 5528.0 30 6944.5 31 8361.0 32 9213.0 33 10065.0 34 10957.5 35 11850.0 36 13901.5 37 15953.0 38 20133.0 39 24313.0 40 30734.5 41 37156.0 42 40063.5 43 42971.0 44 39642.5 45 36314.0 46 34719.5 47 33125.0 48 32364.0 49 31603.0 50 30655.0 51 29707.0 52 27657.5 53 25608.0 54 24246.5 55 22885.0 56 21910.5 57 20936.0 58 19636.5 59 18337.0 60 16826.0 61 15315.0 62 13165.5 63 11016.0 64 9432.0 65 7848.0 66 6615.0 67 5382.0 68 4392.0 69 3402.0 70 2731.5 71 2061.0 72 1806.0 73 1551.0 74 1280.0 75 775.0 76 541.0 77 389.0 78 237.0 79 189.0 80 141.0 81 119.0 82 97.0 83 63.5 84 30.0 85 21.5 86 13.0 87 10.0 88 7.0 89 5.0 90 3.0 91 2.5 92 2.0 93 2.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 453685.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.567591033363794 #Duplication Level Percentage of deduplicated Percentage of total 1 68.04108957841588 16.716056622269928 2 6.261403347364926 3.076551934659932 3 3.4644712460437654 2.5534113815895454 4 2.5682829444639603 2.523861001502158 5 2.0185894657546792 2.4795940229458635 6 1.5443793024996184 2.2765007462521356 7 1.387235326879877 2.385672112447369 8 1.2067584614013 2.3717718684606774 9 1.0891352146601359 2.408168568042459 >10 12.21483509160084 59.18310638833795 >50 0.18945385203996923 2.9186110879029203 >100 0.011672512210993366 0.4544130331101214 >500 0.0017957711093835945 0.40279524197042793 >1k 8.978855546917972E-4 0.2494859905085181 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1131 0.24929190958484412 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 983 0.21667015660645603 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 843 0.18581174162689973 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005730848496203313 0.0 2 0.0 0.0 0.0 0.021380473235835435 0.0 3 0.0 0.0 0.0 0.024466314733791066 0.0 4 0.0 0.0 0.0 0.034825925476927824 0.0 5 0.0 0.0 0.0 0.0608351609596967 0.0 6 0.0 0.0 0.0 0.08816689994158942 0.0 7 0.0 0.0 0.0 0.11042904217684076 0.0 8 0.0 0.0 0.0 0.25127566483352987 0.0 9 0.0 0.0 0.0 0.31144957404366463 0.0 10 0.0 0.0 0.0 0.4093148329788289 0.0 11 0.0 0.0 0.0 0.5071800919139932 0.0 12 0.0 0.0 0.0 0.592040733107773 0.0 13 0.0 0.0 0.0 0.6270870758345548 0.0 14 0.0 0.0 0.0 0.6374466865776915 0.0 15 0.0 0.0 0.0 0.659047577063381 0.0 16 0.0 0.0 0.0 0.7064372857819853 0.0 17 0.0 0.0 0.0 0.767052029491828 0.0 18 0.0 0.0 0.0 0.8616110296791827 0.0 19 0.0 0.0 0.0 0.9015065519027519 0.0 20 0.0 0.0 0.0 0.9427245776254449 0.0 21 0.0 0.0 0.0 0.9971676383393765 0.0 22 0.0 0.0 0.0 1.0549169578011175 0.0 23 0.0 0.0 0.0 1.1291975710019067 0.0 24 0.0 0.0 0.0 1.1820977109668602 0.0 25 0.0 0.0 0.0 1.2308099231845884 0.0 26 0.0 0.0 0.0 1.2746729559055292 0.0 27 0.0 0.0 0.0 1.3161113988780762 0.0 28 0.0 0.0 0.0 1.3564477556013534 0.0 29 0.0 0.0 0.0 1.4073641403176214 0.0 30 0.0 0.0 0.0 1.4609255320321368 0.0 31 0.0 0.0 0.0 1.5248465344897892 0.0 32 0.0 0.0 0.0 1.5803916814529906 0.0 33 0.0 0.0 0.0 1.6313080661692585 0.0 34 0.0 0.0 0.0 1.6941269823776408 0.0 35 0.0 0.0 0.0 1.7800897098206905 0.0 36 0.0 0.0 0.0 1.8545907402713335 0.0 37 0.0 0.0 0.0 1.9323980294697862 0.0 38 0.0 0.0 0.0 2.0064582254207215 0.0 39 0.0 0.0 0.0 2.093082204613333 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCG 40 6.7993824E-9 45.000004 5 TCACCGG 20 7.028766E-4 45.000004 42 CCGATTA 20 7.028766E-4 45.000004 12 ACTCTAT 20 7.028766E-4 45.000004 11 GCAAACG 20 7.028766E-4 45.000004 1 GCGATAT 40 6.7993824E-9 45.000004 9 CCGGTTG 20 7.028766E-4 45.000004 20 GTGCGTA 20 7.028766E-4 45.000004 19 CATCACG 20 7.028766E-4 45.000004 40 CGCATTA 25 3.8870603E-5 45.0 31 GCGTTAG 25 3.8870603E-5 45.0 2 TATACGG 30 2.1625856E-6 44.999996 2 CGTTTTA 780 0.0 44.71154 1 AATCGTT 115 0.0 43.043476 22 GGCGATA 170 0.0 42.352943 8 TTAGGCG 70 0.0 41.785713 5 TAGGCGA 135 0.0 41.666664 6 CGTTTTT 915 0.0 41.311478 1 GTATTAG 60 3.6379788E-12 41.249996 2 ATAGGCC 60 3.6379788E-12 41.249996 5 >>END_MODULE