##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546389_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 652092 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62737006434675 31.0 31.0 33.0 30.0 34.0 2 31.811661544690015 31.0 31.0 34.0 30.0 34.0 3 31.847105929838122 31.0 31.0 34.0 30.0 34.0 4 35.7168390349828 37.0 35.0 37.0 35.0 37.0 5 27.409689123620595 35.0 28.0 37.0 0.0 37.0 6 31.509963318059416 36.0 30.0 37.0 17.0 37.0 7 14.652420210645124 0.0 0.0 32.0 0.0 37.0 8 24.940313636726106 17.0 17.0 35.0 17.0 37.0 9 33.302080074590705 32.0 32.0 37.0 28.0 39.0 10 36.24225876103372 37.0 35.0 39.0 33.0 39.0 11 37.197288112720294 39.0 37.0 39.0 34.0 39.0 12 36.863983916379894 39.0 35.0 39.0 33.0 39.0 13 36.14981321654 38.0 35.0 39.0 32.0 39.0 14 37.41917091453353 40.0 35.0 41.0 33.0 41.0 15 37.81519325493949 40.0 35.0 41.0 33.0 41.0 16 37.947074952614045 40.0 35.0 41.0 33.0 41.0 17 38.00862915048797 40.0 35.0 41.0 34.0 41.0 18 37.96816553492452 40.0 36.0 41.0 34.0 41.0 19 37.88105666071659 40.0 36.0 41.0 34.0 41.0 20 37.890188807714246 40.0 35.0 41.0 34.0 41.0 21 37.72523815657913 40.0 35.0 41.0 34.0 41.0 22 37.634642044374104 39.0 35.0 41.0 33.0 41.0 23 37.53892242198953 39.0 35.0 41.0 33.0 41.0 24 37.414177754059246 39.0 35.0 41.0 33.0 41.0 25 37.24331536040927 39.0 35.0 41.0 33.0 41.0 26 36.982071548186454 38.0 35.0 40.0 33.0 41.0 27 36.77095716555333 38.0 35.0 40.0 32.0 41.0 28 36.836561405445856 38.0 35.0 40.0 33.0 41.0 29 36.89002011986039 38.0 35.0 40.0 33.0 41.0 30 36.71880501524325 38.0 35.0 40.0 32.0 41.0 31 36.44961753862952 38.0 35.0 40.0 32.0 41.0 32 36.1409678388939 38.0 35.0 40.0 31.0 41.0 33 35.94264919673911 38.0 35.0 40.0 31.0 41.0 34 35.73837433981708 38.0 35.0 40.0 30.0 41.0 35 35.610447605552594 38.0 35.0 40.0 30.0 41.0 36 35.42261828085608 38.0 35.0 40.0 29.0 41.0 37 35.17725412978537 38.0 34.0 40.0 29.0 41.0 38 35.05392337277562 37.0 34.0 40.0 28.0 41.0 39 35.02796844617017 37.0 34.0 40.0 28.0 41.0 40 34.77771694791532 37.0 34.0 40.0 27.0 40.0 41 34.6981560884047 37.0 34.0 40.0 26.0 40.0 42 34.68567472074493 37.0 34.0 40.0 26.0 41.0 43 34.54412567551818 36.0 33.0 40.0 26.0 41.0 44 34.35481343123363 36.0 33.0 40.0 26.0 40.0 45 34.09024646828975 36.0 33.0 39.0 24.0 40.0 46 34.11130024597756 36.0 33.0 39.0 25.0 40.0 47 33.98112996325672 36.0 33.0 39.0 24.0 40.0 48 34.024447470602304 36.0 33.0 39.0 25.0 40.0 49 33.93839519576992 36.0 33.0 39.0 24.0 40.0 50 33.95037663397189 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 4.0 15 9.0 16 27.0 17 81.0 18 175.0 19 399.0 20 802.0 21 1357.0 22 2253.0 23 3619.0 24 5575.0 25 8329.0 26 10316.0 27 11038.0 28 11384.0 29 12926.0 30 15919.0 31 22154.0 32 31870.0 33 66505.0 34 60526.0 35 69321.0 36 79660.0 37 153399.0 38 70383.0 39 14058.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.939180361053346 23.278003717266888 30.405525600682115 16.377290320997652 2 30.645829116136987 24.37140771547573 31.21292701029916 13.769836158088122 3 28.219484367236525 22.998288585046282 35.58362930384057 13.19859774387663 4 24.951540580163538 27.759579936573363 32.45968360292719 14.829195880335904 5 17.68216754691056 47.439931788766 24.480594762702196 10.397305901621245 6 21.90304435570441 38.27926120854113 28.681995792004813 11.135698643749654 7 38.058740177766325 57.05513945884937 3.905737227262411 0.9803831361218969 8 88.641019978776 2.6083742784760435 7.494034584077093 1.2565711586708626 9 85.58807652907872 3.6200413438594556 8.780662851254117 2.0112192758077083 10 61.49623059322917 17.50780564705594 12.12788992964183 8.868073830073058 11 57.37733325972408 14.468050520478707 17.85116210596051 10.303454113836699 12 48.689295375499164 19.700441042061552 20.87374174196279 10.736521840476497 13 19.694153585690362 47.304521447893855 22.46140115198469 10.539923814431093 14 12.16408114192476 48.688528612527065 28.1944878943462 10.952902351201978 15 10.99047373683468 19.915441379437258 57.123841421149166 11.9702434625789 16 11.83744011581188 13.831483901044638 56.228415622335504 18.102660360807985 17 13.394582359544357 13.679051422191959 30.5180864049858 42.408279813277886 18 21.57425639326966 20.03996368610564 36.35008557074769 22.035694349877012 19 30.01769688939597 21.50432761021451 27.593345724222964 20.884629776166552 20 34.13659422290106 19.92832299736847 24.26160725787159 21.67347552185888 21 21.74524453604706 26.882709801684424 29.499518472853524 21.87252718941499 22 22.874072983566737 23.617219656122142 25.877636897861038 27.631070462450086 23 18.769130736153794 31.052673549131104 24.08126460683462 26.096931107880483 24 20.096704146040743 21.479944547701855 42.17211681787232 16.251234488385073 25 14.981935064377419 22.769639866767267 40.59795243615931 21.650472632696 26 14.754819872042596 36.04675413898653 29.906976316225318 19.291449672745564 27 16.81618544622538 33.68343730639235 30.930911589162264 18.569465658220004 28 13.285855370101151 27.150156726351497 43.62589941296627 15.938088490581084 29 14.029768805628654 22.04550891591984 43.649209007317985 20.275513271133523 30 18.043466259362177 28.297694190390317 34.196401734724546 19.46243781552296 31 31.352784576409466 24.2824632107126 25.38844212166381 18.976310091214124 32 32.43729412414199 25.99525833778056 25.895119093624825 15.672328444452624 33 30.362433521650317 25.23416941167811 25.82641713132503 18.576979935346547 34 19.915901437220516 26.42418554437104 29.366408420897667 24.293504597510783 35 19.597541451206272 24.88360538083583 32.649687467412576 22.86916570054532 36 32.881403237579974 21.76840077780436 27.0047784668421 18.345417517773566 37 21.47764425878557 30.43987658183201 29.249400391355824 18.8330787680266 38 21.846763953552568 32.79092520687265 22.933113732418125 22.42919710715666 39 20.452942222876526 32.48222643430682 26.438447335652025 20.62638400716463 40 24.64146163424793 25.283855652269928 24.095526398115602 25.97915631536654 41 16.85053642737528 23.012857081516106 26.713868595228895 33.42273789587972 42 23.54943780938886 23.92147120344982 23.828999589015044 28.70009139814627 43 23.55679873392098 26.39596866699791 24.40008465063212 25.64714794844899 44 20.130441716812967 31.992571600326336 27.382332554302153 20.494654128558548 45 16.832747526422654 38.98897701551315 21.098709997975746 23.079565460088453 46 22.773780386816583 32.81193451230808 25.811081871883108 18.60320322899223 47 23.7007968200806 26.389067800249045 26.80726032523018 23.102875054440172 48 25.85724100280328 21.0615986701263 30.61439183428105 22.46676849278936 49 20.809487004901147 21.0655858375812 34.09840942689068 24.026517730626967 50 18.32900879017071 34.87422020205738 25.685946154837048 21.11082485293486 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 263.0 1 498.5 2 734.0 3 3345.0 4 5956.0 5 4614.5 6 3273.0 7 3591.0 8 3909.0 9 4212.5 10 4516.0 11 4649.5 12 4783.0 13 4416.0 14 4049.0 15 3782.0 16 3515.0 17 3167.5 18 2820.0 19 2597.0 20 2374.0 21 2365.5 22 2357.0 23 2554.5 24 2752.0 25 3245.0 26 3738.0 27 4386.0 28 5034.0 29 5787.0 30 6540.0 31 7359.0 32 8178.0 33 9499.0 34 10820.0 35 11959.5 36 13099.0 37 17541.5 38 21984.0 39 34369.5 40 46755.0 41 59184.5 42 71614.0 43 71633.0 44 71652.0 45 68991.0 46 66330.0 47 60490.5 48 54651.0 49 52057.5 50 49464.0 51 46679.0 52 43894.0 53 38843.0 54 33792.0 55 29489.0 56 25186.0 57 23209.5 58 21233.0 59 19468.0 60 17703.0 61 15573.5 62 13444.0 63 11310.5 64 9177.0 65 7565.0 66 5953.0 67 5061.0 68 4169.0 69 3347.5 70 2526.0 71 2109.0 72 1692.0 73 1315.5 74 939.0 75 779.0 76 619.0 77 502.5 78 386.0 79 273.5 80 161.0 81 95.0 82 29.0 83 19.0 84 9.0 85 8.0 86 7.0 87 7.0 88 7.0 89 5.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 652092.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.002090475915487 #Duplication Level Percentage of deduplicated Percentage of total 1 74.23414614059902 14.84838107506594 2 5.283509003577069 2.1136245023972524 3 2.064830550041514 1.2390278243809412 4 1.3980712551787555 1.1185739095144878 5 1.068032104241467 1.0681437390110111 6 0.8860871236900782 1.06341568905556 7 0.80527098840279 1.1274972217363746 8 0.6938820878913811 1.1103273841296435 9 0.720894239593737 1.2977452623528203 >10 11.180992937269597 51.95071299291987 >50 1.5808375966698474 20.07224504334549 >100 0.08035538125790037 2.0390763795679083 >500 0.001545295793421161 0.24789135310193458 >1k 0.001545295793421161 0.7033376234207632 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2658 0.40761119596621337 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1893 0.2902964612355312 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 822 0.12605583261257614 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 782 0.11992172883580844 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008281040098636389 0.0 2 0.0 0.0 0.0 0.032050692233611205 0.0 3 0.0 0.0 0.0 0.04278537384295467 0.0 4 0.0 0.0 0.0 0.057967280690454724 0.0 5 0.0 0.0 0.0 0.09293167221803059 0.0 6 0.0 0.0 0.0 0.14752519583126308 0.0 7 0.0 0.0 0.0 0.17804236212068236 0.0 8 0.0 0.0 0.0 0.3703465155223496 0.0 9 0.0 0.0 0.0 0.4569907313691933 0.0 10 0.0 0.0 0.0 0.6085030946553553 0.0 11 0.0 0.0 0.0 0.7882323353146489 0.0 12 0.0 0.0 0.0 0.9469522705385129 0.0 13 0.0 0.0 0.0 1.0167277009992455 0.0 14 0.0 0.0 0.0 1.0357434227072253 0.0 15 0.0 0.0 0.0 1.0769952706059882 0.0 16 0.0 0.0 0.0 1.1688534746630843 0.0 17 0.0 0.0 0.0 1.2788072848616452 0.0 18 0.0 0.0 0.0 1.4341534630082873 0.0 19 0.0 0.0 0.0 1.4999417260141208 0.0 20 0.0 0.0 0.0 1.5733976187409138 0.0 21 0.0 0.0 0.0 1.6716966317636162 0.0 22 0.0 0.0 0.0 1.7584942002048791 0.0 23 0.0 0.0 0.0 1.861240438465738 0.0 24 0.0 0.0 0.0 1.9368432675143998 0.0 25 0.0 0.0 0.0 1.994350490421597 0.0 26 0.0 0.0 0.0 2.0595253430497538 0.0 27 0.0 0.0 0.0 2.1191795022788193 0.0 28 0.0 0.0 0.0 2.18174736080185 0.0 29 0.0 0.0 0.0 2.2426283407862693 0.0 30 0.0 0.0 0.0 2.3301926721996282 0.0 31 0.0 0.0 0.0 2.4205173503125326 0.0 32 0.0 0.0 0.0 2.493359832661649 0.0 33 0.0 0.0 0.0 2.558074627506548 0.0 34 0.0 0.0 0.0 2.640118265520816 0.0 35 0.0 0.0 0.0 2.7393373941100334 0.0 36 0.0 0.0 0.0 2.8155536335363722 0.0 37 0.0 0.0 0.0 2.8946835722566755 0.0 38 0.0 0.0 0.0 2.968752875361145 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTAC 20 7.853972E-4 44.000004 24 AACGTAG 20 7.853972E-4 44.000004 2 CTATGCG 20 7.853972E-4 44.000004 33 TTAGGCC 80 0.0 44.000004 5 ACGCCGG 20 7.853972E-4 44.000004 27 TCACCCG 20 7.853972E-4 44.000004 12 ATCTAGT 20 7.853972E-4 44.000004 20 CGCATGA 20 7.853972E-4 44.000004 17 CGTGAAT 20 7.853972E-4 44.000004 39 ATTACGG 40 8.303687E-9 44.000004 2 TGGAACG 20 7.853972E-4 44.000004 1 TAGCGAA 20 7.853972E-4 44.000004 1 TCTTACG 20 7.853972E-4 44.000004 1 CAATTAG 20 7.853972E-4 44.000004 2 ATCGTAC 20 7.853972E-4 44.000004 11 ATACTCC 20 7.853972E-4 44.000004 27 TGCGCAA 40 8.303687E-9 44.000004 1 TTGACAC 20 7.853972E-4 44.000004 41 ACTACCT 20 7.853972E-4 44.000004 38 ATGACCG 20 7.853972E-4 44.000004 37 >>END_MODULE