SRR1546388_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546388_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	246498
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1041	0.422315799722513	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	520	0.21095505845889215	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	434	0.17606633725222923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACCT	35	1.2067358E-7	45.000004	11
ATAGGCG	35	1.2067358E-7	45.000004	5
GTTTAAG	35	1.2067358E-7	45.000004	2
TGCATAG	65	0.0	45.000004	2
GTACGGG	35	1.2067358E-7	45.000004	3
ATCTGAG	35	1.2067358E-7	45.000004	2
TCGCCGA	20	7.0224935E-4	45.0	27
GTGTTAA	25	3.8818605E-5	45.0	1
GCGACTG	20	7.0224935E-4	45.0	20
TTGTGCA	20	7.0224935E-4	45.0	1
GGATGGC	50	2.1827873E-11	45.0	8
ACGCAGA	20	7.0224935E-4	45.0	1
CGCATTG	20	7.0224935E-4	45.0	12
GACCGTT	20	7.0224935E-4	45.0	14
GACCGAT	95	0.0	45.0	9
TCCTCGC	25	3.8818605E-5	45.0	24
AAGGTAC	20	7.0224935E-4	45.0	6
CGATTAT	25	3.8818605E-5	45.0	10
CGCGACC	25	3.8818605E-5	45.0	10
TATGCAA	20	7.0224935E-4	45.0	1