SRR1546386_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546386_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	600211
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2138	0.3562080668298315	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1575	0.26240771995181694	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1274	0.2122586890276919	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAAG	85	0.0	45.000004	2
TTGGCCG	20	7.030589E-4	45.0	36
TCGTTAA	35	1.2106284E-7	45.0	1
GCGACAA	35	1.2106284E-7	45.0	1
CGTATGG	25	3.8885708E-5	45.0	2
CGACGTC	20	7.030589E-4	45.0	18
ACGTTCA	25	3.8885708E-5	45.0	22
CGTGATA	25	3.8885708E-5	45.0	43
GACGTCG	20	7.030589E-4	45.0	19
GTCTCGA	20	7.030589E-4	45.0	26
GCACGTA	20	7.030589E-4	45.0	11
CACGATC	20	7.030589E-4	45.0	43
GATCACG	25	3.8885708E-5	45.0	9
CGATTCA	25	3.8885708E-5	45.0	10
TAACGCA	25	3.8885708E-5	45.0	33
CGACAAG	45	3.8380676E-10	45.0	2
TATGCGA	25	3.8885708E-5	45.0	1
GTAATCC	20	7.030589E-4	45.0	40
TATGACG	20	7.030589E-4	45.0	1
GCATTTC	25	3.8885708E-5	45.0	26