##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546386_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 600211 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.05646847525287 31.0 31.0 33.0 30.0 33.0 2 31.19674081281416 31.0 31.0 33.0 30.0 34.0 3 31.12186880946867 31.0 31.0 34.0 28.0 34.0 4 35.06134176148055 35.0 35.0 37.0 32.0 37.0 5 32.78684995776485 35.0 35.0 37.0 28.0 37.0 6 33.98402395157703 35.0 35.0 37.0 28.0 37.0 7 15.224695981913028 0.0 0.0 35.0 0.0 37.0 8 24.89737775548932 17.0 17.0 35.0 17.0 37.0 9 32.77887442915908 32.0 32.0 37.0 27.0 39.0 10 35.65334690633794 37.0 35.0 37.0 32.0 39.0 11 36.55065302035451 37.0 35.0 39.0 32.0 39.0 12 36.19240233851096 37.0 35.0 39.0 32.0 39.0 13 35.59721831156043 37.0 35.0 39.0 30.0 39.0 14 36.56596097039208 38.0 35.0 40.0 31.0 41.0 15 37.06944724438572 39.0 35.0 41.0 32.0 41.0 16 37.21680875558762 39.0 35.0 41.0 32.0 41.0 17 37.219136270411575 39.0 35.0 41.0 32.0 41.0 18 37.11615915069867 38.0 35.0 40.0 32.0 41.0 19 37.03058424454067 38.0 35.0 40.0 32.0 41.0 20 37.10321870142333 39.0 35.0 40.0 32.0 41.0 21 36.91528145935346 39.0 35.0 40.0 32.0 41.0 22 36.95398951368769 39.0 35.0 40.0 32.0 41.0 23 36.97779447560941 38.0 35.0 40.0 32.0 41.0 24 36.809387032227 38.0 35.0 40.0 32.0 41.0 25 36.56033628174092 38.0 35.0 40.0 31.0 41.0 26 36.38030792504636 38.0 35.0 40.0 31.0 41.0 27 36.27163280912879 38.0 35.0 40.0 31.0 41.0 28 36.2205407764936 38.0 35.0 40.0 31.0 41.0 29 36.30473116953871 38.0 35.0 40.0 31.0 41.0 30 36.10877174860174 38.0 35.0 40.0 30.0 41.0 31 35.91489492861677 38.0 34.0 40.0 30.0 41.0 32 35.76092574111438 38.0 34.0 40.0 30.0 41.0 33 35.539788507708124 38.0 34.0 40.0 29.0 41.0 34 35.383755046142106 38.0 34.0 40.0 28.0 41.0 35 35.18710586776984 38.0 34.0 40.0 27.0 41.0 36 34.952155158769166 38.0 34.0 40.0 25.0 41.0 37 34.75550264823537 37.0 33.0 40.0 25.0 41.0 38 34.7461342761129 37.0 33.0 40.0 25.0 41.0 39 34.67130225870569 37.0 33.0 40.0 24.0 41.0 40 34.47834844746264 37.0 33.0 40.0 23.0 41.0 41 34.391110792704566 37.0 33.0 40.0 23.0 41.0 42 34.358532249492264 37.0 33.0 40.0 23.0 41.0 43 34.24451901081453 37.0 33.0 40.0 23.0 41.0 44 34.022583724723475 36.0 33.0 40.0 23.0 41.0 45 33.92462317418374 36.0 33.0 40.0 23.0 41.0 46 33.93512781338563 36.0 33.0 40.0 23.0 41.0 47 33.90631961093682 36.0 33.0 40.0 23.0 41.0 48 33.90556654243258 36.0 33.0 40.0 23.0 41.0 49 33.82644936530654 36.0 33.0 40.0 23.0 41.0 50 33.676735348069265 36.0 33.0 40.0 23.0 41.0 51 33.47250883439324 35.0 33.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 11.0 15 28.0 16 62.0 17 208.0 18 385.0 19 751.0 20 1288.0 21 2104.0 22 3313.0 23 4821.0 24 7045.0 25 9382.0 26 11117.0 27 12276.0 28 12810.0 29 14676.0 30 18124.0 31 23425.0 32 31817.0 33 50140.0 34 62911.0 35 60856.0 36 64717.0 37 99185.0 38 92360.0 39 16395.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.70973707579501 24.1666680550673 31.09089970027207 16.032695168865615 2 31.78882093130582 25.001374516628317 30.655386189190136 12.554418362875722 3 28.849521251693155 23.070886738163747 34.84891146613441 13.230680544008692 4 26.244937197085694 27.745242922905444 31.761997031044082 14.24782284896478 5 21.197878745974332 36.4923335293755 28.878177840792656 13.43160988385751 6 21.313504750829292 39.60657168895605 28.117445365046624 10.962478195168032 7 37.33670325935379 57.35199788074527 4.579722797482885 0.7315760624180496 8 87.80462204124882 3.264518644276763 7.444048842823607 1.4868104716508028 9 83.88616669804452 5.120199396545548 8.680447376006105 2.3131865294038265 10 59.54905858106566 19.72373048811168 12.487608524335608 8.239602406487052 11 55.295054572475344 17.07432886101721 17.960017393883152 9.670599172624293 12 48.445629953466366 20.22871956695229 20.734208470021375 10.591442009559971 13 20.91547805688333 45.518326055337205 21.207875230543927 12.358320657235538 14 13.179531864627606 47.403996261314774 26.87588198150317 12.540589892554452 15 12.321500272404204 22.09056481803899 53.70777943090014 11.880155478656672 16 13.86462427379705 15.634335258767335 52.528027643612 17.973012823823623 17 14.6206917234106 16.378906751125854 30.457122578559876 38.54327894690367 18 21.679875910304876 22.541572880203795 34.77410443993862 21.004446769552708 19 30.97377422273167 22.776823483741552 26.34773438007634 19.901667913450435 20 34.4838731712681 21.82849031423949 24.2281464351703 19.459490079322105 21 22.43561014376611 27.73891181601137 27.701924823103873 22.123553217118648 22 21.7906702809512 26.362395890778412 25.136327058317825 26.710606769952566 23 20.39949284501617 29.90015177995738 24.444903542254306 25.255451832772142 24 19.929658070245296 22.759662851897083 40.44194458282171 16.868734495035913 25 16.91805048557924 23.478410092450822 38.31702517947855 21.286514242491393 26 15.599514170849918 36.58613387625352 29.05778134689301 18.756570606003557 27 17.024346438169243 35.34640318154782 30.136235423875934 17.493014956406995 28 13.973919171757931 30.336831547572434 40.890453523844116 14.798795756825516 29 14.92108608472687 24.838765034296273 40.21752350423434 20.02262537674251 30 18.010832857111918 30.203545086644528 32.74198573501652 19.043636321227037 31 30.626063167785993 26.29108763418198 24.258469105031395 18.824380093000627 32 33.21282015824435 26.284589919211744 25.669972726257935 14.832617196285971 33 30.04660027890192 28.090121640556404 24.036880363738753 17.826397716802926 34 20.493793016122662 27.81205276144556 28.180256609758903 23.513897612672878 35 21.810996466242706 25.745779400910678 30.207543680472366 22.235680452374247 36 31.754499667616887 24.287625518359377 26.246936493999613 17.710938320024123 37 22.0747370508038 33.82427179775112 27.432686172029502 16.66830497941557 38 20.72437859352794 34.12016774101107 23.01923823455418 22.136215430906798 39 21.63672441857947 32.64668591545307 26.202785353817244 19.513804312150228 40 24.542535874884 25.824251804781984 25.381407538349016 24.251804781985 41 17.07299599640793 25.05868769482732 26.53900045150789 31.329315857256862 42 22.870124006391084 25.869569201497473 22.97458727014333 28.285719521968105 43 22.9041120539277 27.304397953386395 24.838098601991632 24.95339139069427 44 20.33734803260853 32.50856782031652 26.885045425691967 20.26903872138298 45 17.21694537421007 39.0452690803734 21.48777679849253 22.250008746924 46 21.866310347527786 35.06850091051314 24.376261014876434 18.688927727082643 47 23.83728388849921 26.856055620440145 26.35956355348369 22.94709693757695 48 24.250138701223403 22.74716724618509 30.153729271872727 22.84896478071878 49 20.691556802524445 24.447236055320545 32.32613197692145 22.535075165233557 50 19.068460924574858 34.53418881026839 25.512694702363003 20.88465556279375 51 18.14728487148686 36.73841365786365 22.789985521758183 22.324315948891307 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 241.0 1 445.0 2 649.0 3 2961.5 4 5274.0 5 4186.0 6 3098.0 7 3253.5 8 3409.0 9 3634.0 10 3859.0 11 3841.0 12 3823.0 13 3680.0 14 3537.0 15 3403.0 16 3269.0 17 3139.5 18 3010.0 19 2774.0 20 2538.0 21 2504.5 22 2471.0 23 2517.5 24 2564.0 25 2887.5 26 3831.0 27 4451.0 28 5647.5 29 6844.0 30 7971.5 31 9099.0 32 10078.0 33 11057.0 34 11711.5 35 12366.0 36 16227.5 37 20089.0 38 28104.0 39 36119.0 40 46630.5 41 57142.0 42 62133.5 43 67125.0 44 63611.0 45 60097.0 46 55140.5 47 50184.0 48 46996.5 49 43809.0 50 40889.5 51 37970.0 52 34043.0 53 30116.0 54 27531.0 55 24946.0 56 23172.5 57 21399.0 58 20517.0 59 19635.0 60 18031.5 61 16428.0 62 13642.5 63 10857.0 64 9114.0 65 7371.0 66 6012.5 67 4654.0 68 3824.5 69 2995.0 70 2443.0 71 1891.0 72 1476.5 73 1062.0 74 871.5 75 539.5 76 398.0 77 311.5 78 225.0 79 184.0 80 143.0 81 108.0 82 73.0 83 46.5 84 20.0 85 12.0 86 4.0 87 4.5 88 5.0 89 3.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 600211.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.360028512531283 #Duplication Level Percentage of deduplicated Percentage of total 1 74.6665733131921 18.18879854842367 2 5.611593708173012 2.733971654636714 3 2.6603906140626292 1.9442157363910875 4 1.7590988426812078 1.714067918563 5 1.3008782866776722 1.5844716077400467 6 1.0252905354615462 1.4985664006483042 7 0.86702261647701 1.4784486960872607 8 0.7476168359821487 1.4569573952778854 9 0.6982921378708877 1.5309374749750124 >10 9.970630930071005 55.62316992146541 >50 0.6395957416772637 9.7268458534899 >100 0.05097734391689138 1.6938282279849126 >500 0.0 0.0 >1k 0.002039093756675655 0.8257205643167898 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2138 0.3562080668298315 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1575 0.26240771995181694 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1274 0.2122586890276919 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0061644988179157 0.0 2 0.0 0.0 0.0 0.028489981023340126 0.0 3 0.0 0.0 0.0 0.03682038483133431 0.0 4 0.0 0.0 0.0 0.05614692166588083 0.0 5 0.0 0.0 0.0 0.09696590032505235 0.0 6 0.0 0.0 0.0 0.1354523659179855 0.0 7 0.0 0.0 0.0 0.16260948233204656 0.0 8 0.0 0.0 0.0 0.34687801456487805 0.0 9 0.0 0.0 0.0 0.4186860953897879 0.0 10 0.0 0.0 0.0 0.5423092879004217 0.0 11 0.0 0.0 0.0 0.7187472405537386 0.0 12 0.0 0.0 0.0 0.8625300102797183 0.0 13 0.0 0.0 0.0 0.9251746469158346 0.0 14 0.0 0.0 0.0 0.9499992502636573 0.0 15 0.0 0.0 0.0 0.9894853643135497 0.0 16 0.0 0.0 0.0 1.0817862385061254 0.0 17 0.0 0.0 0.0 1.178418922678858 0.0 18 0.0 0.0 0.0 1.3255338539280352 0.0 19 0.0 0.0 0.0 1.3966755024483057 0.0 20 0.0 0.0 0.0 1.4649848136738581 0.0 21 0.0 0.0 0.0 1.5602846332373115 0.0 22 0.0 0.0 0.0 1.6517524670490877 0.0 23 0.0 0.0 0.0 1.7700442011226052 0.0 24 0.0 0.0 0.0 1.8510157261363087 0.0 25 0.0 0.0 0.0 1.918158780828742 0.0 26 0.0 0.0 0.0 1.9904666858821314 0.0 27 0.0 0.0 0.0 2.0531113225182476 0.0 28 0.0 0.0 0.0 2.1250860114193175 0.0 29 0.0 0.0 0.0 2.1953946195587886 0.0 30 0.0 0.0 0.0 2.288028709903684 0.0 31 0.0 0.0 0.0 2.386827299066495 0.0 32 0.0 0.0 0.0 2.469798120994117 0.0 33 0.0 0.0 0.0 2.549103565246222 0.0 34 0.0 0.0 0.0 2.643237128276556 0.0 35 0.0 0.0 0.0 2.7631949431116722 0.0 36 0.0 0.0 0.0 2.878154515661992 0.0 37 0.0 0.0 0.0 2.9796188340433614 0.0 38 0.0 0.0 0.0 3.083415665490969 0.0 39 0.0 0.0 0.0 3.1747168912265855 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTAAG 85 0.0 45.000004 2 TTGGCCG 20 7.030589E-4 45.0 36 TCGTTAA 35 1.2106284E-7 45.0 1 GCGACAA 35 1.2106284E-7 45.0 1 CGTATGG 25 3.8885708E-5 45.0 2 CGACGTC 20 7.030589E-4 45.0 18 ACGTTCA 25 3.8885708E-5 45.0 22 CGTGATA 25 3.8885708E-5 45.0 43 GACGTCG 20 7.030589E-4 45.0 19 GTCTCGA 20 7.030589E-4 45.0 26 GCACGTA 20 7.030589E-4 45.0 11 CACGATC 20 7.030589E-4 45.0 43 GATCACG 25 3.8885708E-5 45.0 9 CGATTCA 25 3.8885708E-5 45.0 10 TAACGCA 25 3.8885708E-5 45.0 33 CGACAAG 45 3.8380676E-10 45.0 2 TATGCGA 25 3.8885708E-5 45.0 1 GTAATCC 20 7.030589E-4 45.0 40 TATGACG 20 7.030589E-4 45.0 1 GCATTTC 25 3.8885708E-5 45.0 26 >>END_MODULE