SRR1546384_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546384_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	44101
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	144	0.3265232080905195	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	82	0.1859368268293236	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81	0.1836693045509172	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAGG	20	6.9596677E-4	45.000004	3
TCGCGCA	20	6.9596677E-4	45.000004	34
GGCGATA	20	6.9596677E-4	45.000004	8
GTACATG	20	6.9596677E-4	45.000004	41
ACTCCTC	20	6.9596677E-4	45.000004	33
ATGAAGG	20	6.9596677E-4	45.000004	3
ATGAAAG	20	6.9596677E-4	45.000004	2
TAATGGG	35	1.1767952E-7	45.000004	3
AGTACAT	20	6.9596677E-4	45.000004	40
CGCAGTA	20	6.9596677E-4	45.000004	37
GGTAGTT	20	6.9596677E-4	45.000004	8
GCGCAGT	20	6.9596677E-4	45.000004	36
AAGGATG	40	6.5629138E-9	45.000004	6
CGTAAGG	20	6.9596677E-4	45.000004	3
AACAGGG	20	6.9596677E-4	45.000004	4
CAGGTGG	20	6.9596677E-4	45.000004	34
TGAAAGG	35	1.1767952E-7	45.000004	3
CCTCCGC	45	3.6743586E-10	45.0	45
CGTTTTT	90	0.0	45.0	1
CAATGAT	25	3.8299193E-5	44.999996	18