##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546383_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 125223 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.518427126007204 31.0 31.0 33.0 30.0 34.0 2 31.712065674836094 31.0 31.0 34.0 30.0 34.0 3 31.785494677495347 31.0 31.0 34.0 30.0 34.0 4 35.67474026337015 37.0 35.0 37.0 35.0 37.0 5 27.099071256877732 35.0 25.0 37.0 0.0 37.0 6 31.32218522156473 35.0 26.0 37.0 17.0 37.0 7 14.915311085024317 0.0 0.0 32.0 0.0 37.0 8 25.05134040871086 17.0 17.0 35.0 17.0 37.0 9 33.287495108726034 32.0 32.0 37.0 28.0 39.0 10 36.157910288046125 37.0 35.0 39.0 33.0 39.0 11 37.038507302971496 39.0 37.0 39.0 34.0 39.0 12 36.82609424786182 39.0 35.0 39.0 33.0 39.0 13 36.216956948803336 38.0 35.0 39.0 32.0 39.0 14 37.49226579781669 40.0 35.0 41.0 33.0 41.0 15 37.84054047579119 40.0 35.0 41.0 33.0 41.0 16 37.957819250457185 40.0 35.0 41.0 33.0 41.0 17 38.00650040328055 40.0 35.0 41.0 34.0 41.0 18 37.98454756714022 40.0 36.0 41.0 34.0 41.0 19 37.90682222914321 40.0 36.0 41.0 34.0 41.0 20 37.92456657323335 40.0 36.0 41.0 34.0 41.0 21 37.767798247925704 40.0 35.0 41.0 33.0 41.0 22 37.69329915430871 39.0 35.0 41.0 33.0 41.0 23 37.62941312698147 39.0 35.0 41.0 33.0 41.0 24 37.51001014190684 39.0 35.0 41.0 33.0 41.0 25 37.31389600951902 39.0 35.0 41.0 33.0 41.0 26 37.03417103886666 39.0 35.0 40.0 33.0 41.0 27 36.81044217116664 38.0 35.0 40.0 32.0 41.0 28 36.85388466974917 38.0 35.0 40.0 32.0 41.0 29 36.85901152344218 38.0 35.0 40.0 32.0 41.0 30 36.690935371297606 38.0 35.0 40.0 32.0 41.0 31 36.50358161040703 38.0 35.0 40.0 31.0 41.0 32 36.262898988205045 38.0 35.0 40.0 31.0 41.0 33 36.0572338947318 38.0 35.0 40.0 31.0 41.0 34 35.88513292286561 38.0 35.0 40.0 30.0 41.0 35 35.75517277177515 38.0 35.0 40.0 30.0 41.0 36 35.54554674460762 38.0 35.0 40.0 29.0 41.0 37 35.37541825383516 38.0 34.0 40.0 29.0 41.0 38 35.22416009838448 38.0 34.0 40.0 29.0 41.0 39 35.19922059046661 37.0 34.0 40.0 28.0 41.0 40 34.9770569304361 37.0 34.0 40.0 27.0 41.0 41 34.834247702099454 37.0 34.0 40.0 27.0 40.0 42 34.822524616084905 37.0 34.0 40.0 27.0 41.0 43 34.70170815265566 37.0 34.0 40.0 27.0 41.0 44 34.475863060300426 36.0 33.0 40.0 26.0 40.0 45 34.2167892479816 36.0 33.0 39.0 26.0 40.0 46 34.20885939483961 36.0 33.0 39.0 26.0 40.0 47 34.05324900377726 36.0 33.0 39.0 25.0 40.0 48 34.05796858404606 36.0 33.0 39.0 26.0 40.0 49 33.928679236242544 35.0 33.0 39.0 25.0 40.0 50 33.94273416225454 35.0 33.0 39.0 25.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 6.0 16 10.0 17 15.0 18 51.0 19 93.0 20 138.0 21 275.0 22 442.0 23 706.0 24 1007.0 25 1419.0 26 1838.0 27 2037.0 28 2177.0 29 2580.0 30 3161.0 31 4339.0 32 6113.0 33 11748.0 34 11450.0 35 13552.0 36 16309.0 37 29610.0 38 13331.0 39 2816.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.711610486891384 23.590714165927984 29.948172460330767 15.749502886849859 2 31.363247965629316 23.962850275109204 31.241864513707547 13.432037245553932 3 29.557669118292967 22.720267043594227 34.41220861982224 13.30985521829057 4 26.659639203660667 26.803382765146978 31.671498047483286 14.865479983709061 5 17.81861159691111 47.87858460506457 23.08361882401795 11.219184974006373 6 21.95443329100884 39.790613545434944 27.09486276482755 11.160090398728668 7 39.50632072382869 55.81482634979197 3.5281058591472814 1.150747067232058 8 89.73910543590236 2.501137969861767 6.2768021849021345 1.4829544093337486 9 86.8378812199037 3.0761122158070004 7.6894819641759105 2.3965246001133975 10 60.52162941312697 17.056770721033676 11.767007658337526 10.654592207501818 11 51.97288038139958 17.521541569839407 17.86013751467382 12.645440534087188 12 44.97895753974909 19.887720306972362 22.352922386462552 12.780399766816 13 20.69587855266205 41.749518858356694 23.359127316866708 14.195475272114546 14 14.37116184726448 42.10408631002292 28.79183536570758 14.732916477005023 15 13.408079985306214 20.118508580692048 52.19408575102018 14.279325682981561 16 15.32545938046525 14.224223984411811 50.053903835557364 20.396412799565574 17 16.71817477619926 15.428475599530438 28.81818835198007 39.03516127229024 18 22.591696413598143 20.45790310086805 34.34113541442068 22.609265071113136 19 30.346661555784483 21.222139702770257 25.64065706779106 22.790541673654204 20 34.59747809907125 19.76713543039218 24.382102329444272 21.25328414109229 21 23.462942111273488 26.220422765785838 27.54525925748465 22.771375865456026 22 24.191242822804117 22.262683372862814 25.686974437603315 27.859099366729755 23 20.90350814147561 28.702394927449433 24.279884685720674 26.11421224535429 24 21.748400852878465 20.177603155969752 38.83551743689259 19.238478554259203 25 17.93600217212493 22.281849181060988 37.02674428818987 22.755404358624215 26 17.77868282983158 32.66891864912995 28.014821558339918 21.537576962698544 27 18.817629349240956 31.622784951646267 29.274973447369888 20.28461225174289 28 16.01303274957476 26.057513396101356 40.046157654743936 17.88329619957995 29 17.013647652587782 22.475902989067503 39.481564888239376 21.028884470105332 30 19.305558882952813 27.765666051763656 32.30636544404782 20.622409621235715 31 31.405572458733623 24.14971690504141 24.648027918193943 19.796682718031033 32 33.0474433610439 24.35175646646383 24.611293452480773 17.9895067200115 33 30.127851912188657 25.358759972209576 24.24874024739864 20.264647868203127 34 21.475288086054476 26.530269998322993 27.199476134575917 24.794965781046614 35 22.63162518067767 24.390088082860178 30.16139207653546 22.81689465992669 36 32.33191985497872 22.19081159211966 25.676592958162637 19.800675594738987 37 22.494270221924086 30.123859035480706 27.9740942159188 19.40777652667641 38 22.52062320819658 31.588446211957866 22.28664063311053 23.604289946735022 39 21.973599099207014 30.9655574455172 25.293276794199148 21.76756666107664 40 25.22699504084713 24.636847863411674 24.307036247334754 25.829120848406443 41 19.375833513012786 23.336767207302174 25.924949889397315 31.36244939028773 42 23.664183097354318 24.055485014733716 23.936497288836716 28.34383459907525 43 25.05370419172197 24.925133561725882 23.46773356332303 26.553428683229118 44 22.000750660821094 29.5544748169266 26.382533560128728 22.06224096212357 45 18.429521733227922 36.21219743976746 21.833049839087067 23.525230987917556 46 23.576339809779352 30.871325555209506 25.50809356108702 20.04424107392412 47 23.443776303075314 26.01199460163069 26.442426710748023 24.10180238454597 48 25.546425177483368 21.603060140708973 30.09351317250026 22.757001509307393 49 21.990369181380416 21.516015428475598 32.93005278583008 23.563562604313905 50 19.981952197280055 32.83582089552239 25.767630547103966 21.414596360093594 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 32.0 1 86.5 2 141.0 3 635.0 4 1129.0 5 849.5 6 570.0 7 595.5 8 621.0 9 660.5 10 700.0 11 694.5 12 689.0 13 641.5 14 594.0 15 559.0 16 524.0 17 483.5 18 443.0 19 405.5 20 368.0 21 366.5 22 365.0 23 408.0 24 451.0 25 497.5 26 544.0 27 653.5 28 763.0 29 868.0 30 973.0 31 1131.5 32 1290.0 33 1590.5 34 1891.0 35 2087.5 36 2284.0 37 2871.5 38 3459.0 39 5632.0 40 7805.0 41 9922.0 42 12039.0 43 12243.0 44 12447.0 45 11773.0 46 11099.0 47 10524.5 48 9950.0 49 9639.0 50 9328.0 51 8823.5 52 8319.0 53 7663.5 54 7008.0 55 6500.0 56 5992.0 57 5829.0 58 5666.0 59 5303.0 60 4940.0 61 4536.5 62 4133.0 63 3587.5 64 3042.0 65 2595.5 66 2149.0 67 1748.5 68 1348.0 69 1106.5 70 865.0 71 726.0 72 587.0 73 467.5 74 348.0 75 258.0 76 168.0 77 124.0 78 80.0 79 57.0 80 34.0 81 28.0 82 22.0 83 15.5 84 9.0 85 8.0 86 7.0 87 6.5 88 6.0 89 3.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 125223.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.276331025450595 #Duplication Level Percentage of deduplicated Percentage of total 1 59.093589248317514 23.20979372798927 2 11.662566333895859 9.16125631872739 3 7.998698737368604 9.424786181452289 4 5.503934286237114 8.646973798743042 5 4.023748043022995 7.90190300503901 6 2.883110017689039 6.794279006252844 7 2.21824614195962 6.098719883727431 8 1.7140068722932722 5.3855921036870225 9 1.248398836996523 4.412927337629668 >10 3.6455685907732347 18.29216677447434 >50 0.0 0.0 >100 0.008132891446231421 0.6716018622776966 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 342 0.273112766823986 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 195 0.15572219161016748 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 164 0.1309663560208588 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 140 0.11180054782268434 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007985753415906023 0.0 2 0.0 0.0 0.0 0.021561534222946262 0.0 3 0.0 0.0 0.0 0.031144438322033494 0.0 4 0.0 0.0 0.0 0.039928767079530116 0.0 5 0.0 0.0 0.0 0.0686774793767918 0.0 6 0.0 0.0 0.0 0.11579342453063735 0.0 7 0.0 0.0 0.0 0.14534071216948963 0.0 8 0.0 0.0 0.0 0.3154372599282879 0.0 9 0.0 0.0 0.0 0.3761289858891737 0.0 10 0.0 0.0 0.0 0.5070953419100325 0.0 11 0.0 0.0 0.0 0.628478793831804 0.0 12 0.0 0.0 0.0 0.7362864649465354 0.0 13 0.0 0.0 0.0 0.7865967114667434 0.0 14 0.0 0.0 0.0 0.7977767662490117 0.0 15 0.0 0.0 0.0 0.8241297525215017 0.0 16 0.0 0.0 0.0 0.8912100812151122 0.0 17 0.0 0.0 0.0 0.9670747386662195 0.0 18 0.0 0.0 0.0 1.0828681631968569 0.0 19 0.0 0.0 0.0 1.146754190524105 0.0 20 0.0 0.0 0.0 1.1890786836284069 0.0 21 0.0 0.0 0.0 1.2585547383467894 0.0 22 0.0 0.0 0.0 1.3328222451147154 0.0 23 0.0 0.0 0.0 1.409485477907413 0.0 24 0.0 0.0 0.0 1.4765658066010239 0.0 25 0.0 0.0 0.0 1.5284732038044129 0.0 26 0.0 0.0 0.0 1.5779848749830303 0.0 27 0.0 0.0 0.0 1.6258993954784664 0.0 28 0.0 0.0 0.0 1.6865911214393523 0.0 29 0.0 0.0 0.0 1.7281170392020635 0.0 30 0.0 0.0 0.0 1.795197367895674 0.0 31 0.0 0.0 0.0 1.8582848198813318 0.0 32 0.0 0.0 0.0 1.9133865184510832 0.0 33 0.0 0.0 0.0 1.9748768197535596 0.0 34 0.0 0.0 0.0 2.057928655278982 0.0 35 0.0 0.0 0.0 2.148966244220311 0.0 36 0.0 0.0 0.0 2.21365084688915 0.0 37 0.0 0.0 0.0 2.283925476949123 0.0 38 0.0 0.0 0.0 2.3398257508604647 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATT 130 0.0 44.000004 1 GTGTTTA 20 7.8296004E-4 44.0 1 TTTAGCT 20 7.8296004E-4 44.0 40 TTAGGAT 35 1.4323086E-7 44.0 5 GAAGCAA 20 7.8296004E-4 44.0 1 GCGACCC 20 7.8296004E-4 44.0 31 TCCGCCG 20 7.8296004E-4 44.0 16 GCGCGAC 20 7.8296004E-4 44.0 9 TTATGGG 95 0.0 44.0 3 TTATGAG 20 7.8296004E-4 44.0 2 CGCGACC 20 7.8296004E-4 44.0 10 GGATAAC 25 4.420078E-5 44.0 8 GTAATTA 20 7.8296004E-4 44.0 1 CTGAATT 20 7.8296004E-4 44.0 39 TGGCATG 20 7.8296004E-4 44.0 1 ACAGGGC 30 2.5096178E-6 44.0 5 CCTCAGA 20 7.8296004E-4 44.0 15 TTGACGC 25 4.420078E-5 44.0 42 ACGTGGC 20 7.8296004E-4 44.0 26 TATAGGC 25 4.420078E-5 44.0 4 >>END_MODULE