SRR1546382_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546382_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	47596
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102	0.21430372300193296	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	86	0.18068745272711995	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	65	0.13656609799142785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACAT	25	3.8344868E-5	45.000004	22
CAACTAG	25	3.8344868E-5	45.000004	16
TACGGGG	25	3.8344868E-5	45.000004	4
CACAACT	25	3.8344868E-5	45.000004	14
GGCCGAT	30	2.1217638E-6	45.000004	8
AGGGCAA	25	3.8344868E-5	45.000004	7
CATCAAC	25	3.8344868E-5	45.000004	26
TACATCA	25	3.8344868E-5	45.000004	24
CCACAAC	25	3.8344868E-5	45.000004	13
TGCTAGG	25	3.8344868E-5	45.000004	3
AAGGATC	25	3.8344868E-5	45.000004	6
CTAGATA	25	3.8344868E-5	45.000004	19
TGGGATG	25	3.8344868E-5	45.000004	6
ATACATC	25	3.8344868E-5	45.000004	23
CCTAGGG	25	3.8344868E-5	45.000004	4
ACAACTA	25	3.8344868E-5	45.000004	15
TAGATAC	25	3.8344868E-5	45.000004	20
ATTTATC	25	3.8344868E-5	45.000004	36
GTACGGG	25	3.8344868E-5	45.000004	3
AACATGA	25	3.8344868E-5	45.000004	30