##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546381_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1748667 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.603837094198038 31.0 31.0 33.0 30.0 34.0 2 31.784938470274785 31.0 31.0 34.0 30.0 34.0 3 31.81978615711282 31.0 31.0 34.0 30.0 34.0 4 35.691691442681766 37.0 35.0 37.0 35.0 37.0 5 27.052414210367097 35.0 25.0 37.0 0.0 37.0 6 31.31861698082025 35.0 26.0 37.0 17.0 37.0 7 15.06051009140105 0.0 0.0 32.0 0.0 37.0 8 25.168820593057454 17.0 17.0 35.0 17.0 37.0 9 33.36934647934684 32.0 32.0 37.0 28.0 39.0 10 36.23304951714649 37.0 35.0 39.0 33.0 39.0 11 37.17071231972697 39.0 37.0 39.0 34.0 39.0 12 36.91326993647161 39.0 35.0 39.0 33.0 39.0 13 36.27973822345821 39.0 35.0 39.0 32.0 39.0 14 37.579922306534066 40.0 35.0 41.0 33.0 41.0 15 37.927126205275215 40.0 35.0 41.0 33.0 41.0 16 38.034394198552384 40.0 35.0 41.0 33.0 41.0 17 38.0634117301922 40.0 35.0 41.0 34.0 41.0 18 38.03437475517065 40.0 36.0 41.0 34.0 41.0 19 37.95921293190756 40.0 36.0 41.0 34.0 41.0 20 37.961573015331105 40.0 36.0 41.0 34.0 41.0 21 37.808980783648344 40.0 35.0 41.0 34.0 41.0 22 37.728860326179884 39.0 35.0 41.0 33.0 41.0 23 37.62528200051811 39.0 35.0 41.0 33.0 41.0 24 37.495194911323885 39.0 35.0 41.0 33.0 41.0 25 37.316538254567625 39.0 35.0 41.0 33.0 41.0 26 37.05445233426376 39.0 35.0 40.0 33.0 41.0 27 36.8216384251547 38.0 35.0 40.0 32.0 41.0 28 36.90391137935353 38.0 35.0 40.0 32.0 41.0 29 36.938146027802894 38.0 35.0 40.0 33.0 41.0 30 36.73166817924739 38.0 35.0 40.0 32.0 41.0 31 36.47009407737436 38.0 35.0 40.0 31.0 41.0 32 36.19700549046788 38.0 35.0 40.0 31.0 41.0 33 35.980105989304995 38.0 35.0 40.0 30.0 41.0 34 35.77251986799087 38.0 35.0 40.0 30.0 41.0 35 35.58898463801284 38.0 35.0 40.0 29.0 41.0 36 35.36685944207788 38.0 35.0 40.0 29.0 41.0 37 35.13736520446717 38.0 34.0 40.0 27.0 41.0 38 35.021772584488644 38.0 34.0 40.0 27.0 41.0 39 34.99879451033273 37.0 34.0 40.0 27.0 41.0 40 34.754025780780445 37.0 34.0 40.0 26.0 41.0 41 34.60380221048376 37.0 34.0 40.0 25.0 40.0 42 34.588389327413395 37.0 34.0 40.0 25.0 41.0 43 34.45709102991021 37.0 33.0 40.0 24.0 41.0 44 34.22164597376173 36.0 33.0 40.0 24.0 40.0 45 34.01085912869632 36.0 33.0 39.0 23.0 40.0 46 33.99393538049269 36.0 33.0 39.0 23.0 40.0 47 33.88937859523855 36.0 33.0 39.0 23.0 40.0 48 33.85358618879409 36.0 33.0 39.0 23.0 40.0 49 33.75259040171742 36.0 33.0 39.0 24.0 40.0 50 33.75462681002158 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 5.0 13 5.0 14 14.0 15 21.0 16 70.0 17 229.0 18 591.0 19 1194.0 20 2324.0 21 4070.0 22 6459.0 23 10081.0 24 15225.0 25 22214.0 26 28732.0 27 31431.0 28 32659.0 29 36282.0 30 44052.0 31 59035.0 32 82796.0 33 163976.0 34 155860.0 35 184262.0 36 216251.0 37 412714.0 38 195480.0 39 42632.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.071362929591512 22.744410456650694 30.452110093002272 16.732116520755525 2 30.813413874682833 24.73181000156119 31.419246774829055 13.035529348926925 3 28.106609205755014 22.921173671144935 35.58293259951723 13.38928452358282 4 25.56238551994176 26.26617875215807 33.44273094877413 14.728704779126042 5 17.493038983408503 47.69095545349686 24.696525982362566 10.119479580732065 6 21.13810119365208 38.85668340513088 29.155350904431778 10.849864496785266 7 38.92490680043713 55.76956618956039 4.2425458935291855 1.0629811164732907 8 88.1577224251387 2.5087681073640664 7.97104308596205 1.3624663815351923 9 84.73997622188787 3.605832328282057 9.67577017236558 1.9784212774644916 10 57.79602405718184 19.851578373698366 12.62481650308492 9.72758106603487 11 51.74793142433637 15.972166227189053 19.953713314198758 12.326189034275822 12 43.25917970659937 20.394792147389985 24.02447121149996 12.321556934510687 13 19.367552541450145 42.535256855650616 25.68991122952512 12.40727937337412 14 12.680458886683398 42.73329341721437 32.49452297092586 12.091724725176377 15 11.819860499454728 19.47735046180891 55.99442318062845 12.70836585810792 16 13.961034319284346 14.257202772168743 52.37818292447904 19.403579984067864 17 15.287530444618671 14.704057433462175 30.953863714475084 39.054548407444074 18 21.712481564528865 20.249367089331475 37.48872712757775 20.54942421856191 19 30.148850524428035 20.511452437771172 27.995381624974907 21.344315412825885 20 32.5707524645916 20.956877438643264 25.717761014532787 20.754609082232353 21 22.519896584083764 26.488462354467718 29.725671039711965 21.265970021736557 22 23.29780341254224 22.77031590348534 26.515111224721462 27.41676945925096 23 19.106553734930664 28.527558420213794 26.455751724027504 25.910136120828035 24 20.151578316511948 20.789721542180413 42.20529123040579 16.853408910901845 25 16.25518180419714 22.396259550846445 39.511982555855404 21.836576089101012 26 16.081392283379284 33.51850295110504 29.871267657021033 20.528837108494642 27 17.135509505240275 33.5933599707663 30.464862663960606 18.806267860032815 28 13.541686324497459 26.751862990495045 43.10500512676227 16.601445558245224 29 14.85851794538354 21.918295478784696 41.39032760382623 21.832858972005535 30 18.645059350922732 28.530417741056475 33.203177048574716 19.62134585944608 31 31.0750417317877 24.203121577750366 25.355370690932006 19.36646599952993 32 32.37774830771096 25.028721877864683 26.923936918807296 15.669592895617063 33 29.477882295485646 25.312995556043543 25.82166873395564 19.38745341451517 34 20.712977370762985 25.656114057164686 29.98741326965054 23.643495302421787 35 21.10064409061302 25.19084536964442 32.12555620938692 21.582954330355637 36 32.58281879854769 22.059660301246605 26.637547343204854 18.719973557000845 37 20.99364830468008 31.966978275452103 28.525728454874482 18.513644964993333 38 21.130209468126292 33.36261277876233 23.183144646750925 22.324033106360446 39 22.20234041129615 31.034954053573376 26.044238268349552 20.718467266780923 40 25.437947876868495 24.647231291034828 24.476472650310207 25.43834818178647 41 17.984213117763417 23.29357161769508 26.098107873025565 32.62410739151594 42 23.55234015395727 23.443514402685018 24.163377018037167 28.840768425320544 43 23.62245070101969 25.413815208956308 25.154303249275017 25.80943084074898 44 20.654875971239807 29.21350949037181 28.293094111114353 21.838520427274034 45 17.97923789949716 37.55500618471098 22.657544289450193 21.808211626341663 46 22.624376167675152 31.501023350929593 26.237471170897603 19.637129310497652 47 22.824128321744507 25.253693241766445 27.19076873984584 24.731409696643215 48 24.302454383824937 21.527769438091987 31.76385212278839 22.40592405529469 49 21.582554025437663 21.74284755187809 33.89959323301692 22.77500518966733 50 19.301044738649498 33.918293191328026 25.717475082448516 21.063186987573964 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 957.0 1 1582.5 2 2208.0 3 11864.5 4 21521.0 5 15662.5 6 9804.0 7 10424.5 8 11045.0 9 11919.0 10 12793.0 11 12919.5 12 13046.0 13 12328.0 14 11610.0 15 10935.5 16 10261.0 17 9334.5 18 8408.0 19 8238.5 20 8069.0 21 8188.5 22 8308.0 23 8197.0 24 8086.0 25 9136.0 26 10186.0 27 10683.5 28 11181.0 29 14137.5 30 17094.0 31 21119.0 32 25144.0 33 27708.5 34 30273.0 35 31907.0 36 33541.0 37 45141.0 38 56741.0 39 83040.0 40 109339.0 41 147457.0 42 185575.0 43 193144.5 44 200714.0 45 187821.0 46 174928.0 47 156061.0 48 137194.0 49 127336.0 50 117478.0 51 108714.0 52 99950.0 53 92531.5 54 85113.0 55 79398.0 56 73683.0 57 69114.5 58 64546.0 59 60744.5 60 56943.0 61 50822.0 62 44701.0 63 38104.0 64 31507.0 65 26220.0 66 20933.0 67 17457.0 68 13981.0 69 11430.5 70 8880.0 71 7490.0 72 6100.0 73 4831.0 74 3562.0 75 2669.0 76 1776.0 77 1363.0 78 950.0 79 623.5 80 297.0 81 209.0 82 121.0 83 90.0 84 59.0 85 46.0 86 33.0 87 25.0 88 17.0 89 10.5 90 4.0 91 2.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 2.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1748667.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.64723772903216 #Duplication Level Percentage of deduplicated Percentage of total 1 78.87996371616126 13.131335080403675 2 6.383463540351758 2.1253407018169 3 2.046280013283463 1.021947295238907 4 1.0807548182020805 0.7196632954162787 5 0.7110012630051276 0.5918103525444239 6 0.5227633335220477 0.5221539293497715 7 0.4172080809968416 0.48617534747794094 8 0.3419989076577955 0.4554669695078912 9 0.29385088057994313 0.44026249193097783 >10 5.873880162059643 25.815650373146116 >50 2.289830119119915 26.770450460789675 >100 1.1568374496642155 26.660746785175775 >500 7.225717986659615E-4 0.0655570935723421 >1k 7.225717986659615E-4 0.36393208551031386 >5k 7.225717986659615E-4 0.8295077381190296 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7129 0.4076819657487675 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6663 0.3810330954950256 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3196 0.18276778826386042 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2855 0.16326722011680897 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014754095548209008 0.0 2 0.0 0.0 0.0 0.0481509629906666 0.0 3 0.0 0.0 0.0 0.06353410912426437 0.0 4 0.0 0.0 0.0 0.09361416438921762 0.0 5 0.0 0.0 0.0 0.15045746274161975 0.0 6 0.0 0.0 0.0 0.24647345663868536 0.0 7 0.0 0.0 0.0 0.3111512941000202 0.0 8 0.0 0.0 0.0 0.6335111259033309 0.0 9 0.0 0.0 0.0 0.7555469394687496 0.0 10 0.0 0.0 0.0 0.9780592874458087 0.0 11 0.0 0.0 0.0 1.212923901463229 0.0 12 0.0 0.0 0.0 1.4153066307078477 0.0 13 0.0 0.0 0.0 1.4974263253095073 0.0 14 0.0 0.0 0.0 1.5256192288182941 0.0 15 0.0 0.0 0.0 1.574456428811203 0.0 16 0.0 0.0 0.0 1.6919173290283398 0.0 17 5.718641685352328E-5 0.0 0.0 1.8201864620307926 0.0 18 5.718641685352328E-5 0.0 0.0 2.018680514929372 0.0 19 5.718641685352328E-5 0.0 0.0 2.1020011242849552 0.0 20 5.718641685352328E-5 0.0 0.0 2.1932706455831785 0.0 21 5.718641685352328E-5 0.0 0.0 2.312961816057603 0.0 22 5.718641685352328E-5 0.0 0.0 2.4306514619421535 0.0 23 5.718641685352328E-5 0.0 0.0 2.574418113911911 0.0 24 5.718641685352328E-5 0.0 0.0 2.6772964778313995 0.0 25 5.718641685352328E-5 0.0 0.0 2.7496372951511066 0.0 26 5.718641685352328E-5 0.0 0.0 2.8406780707819155 0.0 27 5.718641685352328E-5 0.0 0.0 2.909873635174679 0.0 28 5.718641685352328E-5 0.0 0.0 2.98844777193142 0.0 29 5.718641685352328E-5 0.0 0.0 3.0736555330431696 0.0 30 1.1437283370704656E-4 0.0 0.0 3.1921457887636695 0.0 31 1.1437283370704656E-4 0.0 0.0 3.311093535818998 0.0 32 1.1437283370704656E-4 0.0 0.0 3.4063089198801144 0.0 33 1.1437283370704656E-4 0.0 0.0 3.506270776540073 0.0 34 1.1437283370704656E-4 0.0 0.0 3.619042390575221 0.0 35 1.1437283370704656E-4 0.0 0.0 3.7706435816539114 0.0 36 1.7155925056056985E-4 0.0 0.0 3.8863888893654424 0.0 37 1.7155925056056985E-4 0.0 0.0 4.0038497895825795 0.0 38 1.7155925056056985E-4 0.0 0.0 4.111417439684057 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGGTA 30 2.5284771E-6 44.000004 37 GTCGAAC 30 2.5284771E-6 44.000004 15 ATAATCG 30 2.5284771E-6 44.000004 40 TGACGTA 30 2.5284771E-6 44.000004 35 CGTTAGT 30 2.5284771E-6 44.000004 22 GCGATCG 30 2.5284771E-6 44.000004 9 ATACGAT 30 2.5284771E-6 44.000004 10 AACGTCA 20 7.8576105E-4 44.0 20 TCACCGT 25 4.4437962E-5 44.0 39 AATTTCG 85 0.0 44.0 37 GTCGATA 20 7.8576105E-4 44.0 1 CGTATAC 20 7.8576105E-4 44.0 28 CGAAAAT 20 7.8576105E-4 44.0 29 ACGTTGT 40 8.3164196E-9 44.0 10 ACGTTGC 25 4.4437962E-5 44.0 18 ACGTTCG 20 7.8576105E-4 44.0 40 CGTTGAT 25 4.4437962E-5 44.0 33 ATAGCCG 25 4.4437962E-5 44.0 43 ATTCGGC 100 0.0 44.0 17 GCGCATT 20 7.8576105E-4 44.0 29 >>END_MODULE