SRR1546380_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546380_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	679773
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2695	0.39645587571145074	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1924	0.2830356604337036	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1774	0.2609694706909512	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	30	2.1641881E-6	45.000004	1
ATAGCGG	45	3.8380676E-10	45.000004	2
CGCGAAG	30	2.1641881E-6	45.000004	2
TCGATAA	45	3.8380676E-10	45.000004	1
TCGTGAA	30	2.1641881E-6	45.000004	1
CCAAATC	30	2.1641881E-6	45.000004	18
CTTAGCC	30	2.1641881E-6	45.000004	27
CGCTTAG	30	2.1641881E-6	45.000004	25
CTTAACG	20	7.03125E-4	45.0	1
AGCGTAA	20	7.03125E-4	45.0	1
CTCACGA	20	7.03125E-4	45.0	24
TCGTTAA	35	1.2109558E-7	45.0	1
CGTATAA	25	3.889118E-5	45.0	11
GATAACC	20	7.03125E-4	45.0	9
GATCGGA	20	7.03125E-4	45.0	10
GTCGAAC	20	7.03125E-4	45.0	15
CGACGTG	20	7.03125E-4	45.0	12
ACGCATG	20	7.03125E-4	45.0	25
GCGCGAC	80	0.0	45.0	9
ATAATCG	20	7.03125E-4	45.0	40