##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546380_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 679773 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.071164932999693 31.0 31.0 33.0 30.0 34.0 2 31.217540267118583 31.0 31.0 33.0 30.0 34.0 3 31.16213206467453 31.0 31.0 34.0 28.0 34.0 4 35.08891203387013 35.0 35.0 37.0 32.0 37.0 5 32.83342086255264 35.0 35.0 37.0 28.0 37.0 6 34.017701497411636 35.0 35.0 37.0 28.0 37.0 7 15.507472347386553 0.0 0.0 35.0 0.0 37.0 8 25.053545816029764 17.0 17.0 35.0 17.0 37.0 9 32.90408415750552 32.0 32.0 37.0 28.0 39.0 10 35.703742278672436 37.0 35.0 38.0 32.0 39.0 11 36.622656386764405 37.0 35.0 39.0 33.0 39.0 12 36.228424782979026 37.0 35.0 39.0 32.0 39.0 13 35.7079657473892 37.0 35.0 39.0 31.0 39.0 14 36.720309573931296 39.0 35.0 40.0 31.0 41.0 15 37.18942794138631 39.0 35.0 41.0 32.0 41.0 16 37.319018260507555 39.0 35.0 41.0 32.0 41.0 17 37.29838784417739 39.0 35.0 41.0 32.0 41.0 18 37.182438843555126 39.0 35.0 40.0 32.0 41.0 19 37.07698158061588 39.0 35.0 40.0 32.0 41.0 20 37.18212256150215 39.0 35.0 40.0 32.0 41.0 21 37.005351786552275 39.0 35.0 40.0 32.0 41.0 22 37.067228324749586 39.0 35.0 40.0 32.0 41.0 23 37.062291382564474 38.0 35.0 40.0 32.0 41.0 24 36.90337068403717 38.0 35.0 40.0 32.0 41.0 25 36.651126184770504 38.0 35.0 40.0 31.0 41.0 26 36.49025924830789 38.0 35.0 40.0 31.0 41.0 27 36.37238607594006 38.0 35.0 40.0 31.0 41.0 28 36.34168759276994 38.0 35.0 40.0 31.0 41.0 29 36.43937608584042 38.0 35.0 40.0 31.0 41.0 30 36.18394817093353 38.0 35.0 40.0 30.0 41.0 31 35.98664112872974 38.0 35.0 40.0 30.0 41.0 32 35.81464400616088 38.0 34.0 40.0 30.0 41.0 33 35.590410328153666 38.0 34.0 40.0 29.0 41.0 34 35.42787665882582 38.0 34.0 40.0 28.0 41.0 35 35.2114514698289 38.0 34.0 40.0 27.0 41.0 36 34.99823323374127 38.0 34.0 40.0 25.0 41.0 37 34.78420149079178 37.0 34.0 40.0 25.0 41.0 38 34.76529812157882 37.0 34.0 40.0 25.0 41.0 39 34.70469848022796 37.0 34.0 40.0 24.0 41.0 40 34.503082646707064 37.0 33.0 40.0 23.0 41.0 41 34.42229244174158 37.0 33.0 40.0 23.0 41.0 42 34.35445803231373 37.0 33.0 40.0 23.0 41.0 43 34.23418405850188 37.0 33.0 40.0 23.0 41.0 44 33.99337867199786 36.0 33.0 40.0 23.0 41.0 45 33.9077633268753 36.0 33.0 40.0 23.0 41.0 46 33.9147171188029 36.0 33.0 40.0 23.0 41.0 47 33.90263367329976 36.0 33.0 40.0 23.0 41.0 48 33.890482558148086 36.0 33.0 40.0 23.0 41.0 49 33.817334610230176 36.0 33.0 40.0 23.0 41.0 50 33.6356092401434 36.0 33.0 40.0 22.0 41.0 51 33.43614118242413 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 1.0 13 4.0 14 7.0 15 25.0 16 75.0 17 225.0 18 468.0 19 812.0 20 1441.0 21 2345.0 22 3591.0 23 5317.0 24 7666.0 25 10315.0 26 12381.0 27 13535.0 28 14388.0 29 16792.0 30 20138.0 31 26152.0 32 34971.0 33 54831.0 34 70158.0 35 70178.0 36 74566.0 37 114031.0 38 106164.0 39 19192.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.5545718938528 23.348088258874654 30.84470845414572 16.252631393126823 2 30.33071334107121 24.593062684160742 32.0174528850072 13.058771089760846 3 28.607196814230633 22.622993263927814 35.174977529263444 13.59483239257811 4 26.014566627388845 26.826161086127282 32.10851269467896 15.05075959180491 5 21.370663442060806 35.98892571490777 30.125644884395232 12.514765958636193 6 21.144558551163403 39.294588046303694 28.833301705128033 10.72755169740487 7 38.20245876196907 56.49356476353135 4.4987076568207325 0.8052688176788428 8 88.87834615378958 2.6619180226340267 7.220498607623426 1.2392372159529725 9 85.288471298507 3.7215364540809945 8.953577150019196 2.036415097392806 10 58.30608158900104 20.197477687404472 11.96061038022987 9.535830343364623 11 52.6352179330453 16.120381362601925 19.239510836705783 12.004889867646993 12 43.9414333902641 20.839750916850182 23.27659380410814 11.942221888777576 13 19.447668559945747 43.5798420943462 24.770769065555708 12.201720280152346 14 12.565076871249667 43.667518421590735 31.892999574858077 11.874405132301519 15 11.714204594769136 19.806317697231282 55.848349375453274 12.631128332546307 16 13.868306037456621 14.38980365504367 52.322466470424686 19.419423837075023 17 15.191836098226908 14.842160544770092 30.544166949849433 39.42183640715356 18 21.62692545893997 20.445354552181392 37.55739048182261 20.37032950705603 19 30.881926760845165 20.42784870831881 27.52183449475045 21.168390036085576 20 33.33907054266645 21.023782939304738 25.19797049897539 20.43917601905342 21 22.547821110870835 27.155682852952385 29.15223170087662 21.144264335300168 22 23.08447084541457 23.08299976609839 25.919093579768543 27.9134358087185 23 18.829668139217063 29.10103814067343 26.031925363319814 26.037368356789692 24 19.72025955723455 21.066591347405677 42.66615473106464 16.546994364295138 25 16.108759836004076 22.63108420016682 39.76489210368756 21.49526386014155 26 15.783945522990765 34.39780632652371 29.48351876288114 20.33472938760439 27 16.959779220416227 34.809267211260234 29.83981417326078 18.391139395062766 28 13.426246702943484 27.386936521456427 42.98361364749703 16.20320312810306 29 14.749923871645388 22.372909780176617 41.13402562325953 21.743140724918465 30 18.582085490303378 29.512351917478334 32.6732600441618 19.232302548056484 31 31.66733600775553 24.452133285670364 24.904637283328405 18.9758934232457 32 33.35010363753783 24.71192589290837 26.63462655916019 15.303343910393616 33 30.3763167998729 25.32610150741498 25.1082346606882 19.189347032023925 34 20.860198919345134 25.602075987130995 29.34582573888636 24.191899354637503 35 21.15117840808623 24.979662328453763 32.314316691013026 21.55484257244698 36 33.27081246239553 22.306564103016743 26.160350587622634 18.26227284696509 37 20.778112693502095 33.07530602127475 28.087464491823006 18.059116793400147 38 20.892121340506318 34.21877597374417 22.837770844090603 22.051331841658907 39 22.165487596594748 31.82238776768127 25.6734233339659 20.338701301758086 40 25.92733162393917 24.66441003099564 24.13349750578502 25.27476083928017 41 17.89420880205598 23.207894400042367 25.77478069885094 33.12311609905071 42 23.323668342226007 23.243053195699154 23.80279887550697 29.63047958656787 43 23.384571025916003 25.148983557746483 25.091611464415326 26.374833951922184 44 20.168497424875657 29.299192524563345 28.803438795009512 21.728871255551486 45 17.73209586141256 38.54051278882803 22.40674460444884 21.32064674531057 46 22.388503220928165 32.33035145555943 25.72888302418602 19.552262299326394 47 22.45911502810497 25.557502283850635 26.857053751767136 25.126328936277257 48 23.995657373858627 21.716661297227162 32.296957955082064 21.990723373832147 49 21.722251398628657 22.12047256951953 34.022386885033676 22.13488914681813 50 19.3358665319158 35.058909371216565 25.12162148246547 20.48360261440216 51 18.70698012424736 35.45595367865449 23.430174484717693 22.406891712380457 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 366.0 1 555.5 2 745.0 3 3897.5 4 7050.0 5 5268.0 6 3486.0 7 3719.5 8 3953.0 9 4098.5 10 4244.0 11 4225.0 12 4206.0 13 4166.0 14 4126.0 15 3827.0 16 3528.0 17 3292.0 18 3056.0 19 3025.5 20 2995.0 21 3124.5 22 3254.0 23 3210.5 24 3167.0 25 3607.5 26 4172.0 27 4296.0 28 4927.0 29 5558.0 30 7240.0 31 8922.0 32 10526.0 33 12130.0 34 12499.0 35 12868.0 36 15878.0 37 18888.0 38 27085.0 39 35282.0 40 49814.5 41 64347.0 42 70897.0 43 77447.0 44 73029.5 45 68612.0 46 63302.0 47 57992.0 48 53258.0 49 48524.0 50 44736.5 51 40949.0 52 38082.5 53 35216.0 54 32744.0 55 30272.0 56 28134.5 57 25997.0 58 24281.5 59 22566.0 60 20671.0 61 18776.0 62 16544.0 63 14312.0 64 12032.5 65 9753.0 66 8403.5 67 7054.0 68 5757.5 69 4461.0 70 3673.0 71 2885.0 72 2435.5 73 1986.0 74 1608.0 75 955.0 76 680.0 77 499.5 78 319.0 79 219.5 80 120.0 81 83.0 82 46.0 83 37.0 84 28.0 85 24.5 86 21.0 87 13.5 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 679773.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.006555530455312 #Duplication Level Percentage of deduplicated Percentage of total 1 76.46244767877232 17.591375485162093 2 5.38680703289887 2.478637502684702 3 2.2592301022170043 1.5593130840819525 4 1.486974925094485 1.3684068474632358 5 1.136773864462806 1.3076625519166918 6 0.897539339450114 1.2389573192296337 7 0.7767014391613555 1.25084573534552 8 0.6543208266295273 1.2042934746068514 9 0.5854217290191768 1.2121683765673368 >10 9.07433954013928 50.214944903381266 >50 1.202982753898771 17.403645073894243 >100 0.07454924904987087 2.2325897009434588 >500 0.0 0.0 >1k 0.0019115192064069456 0.9371599447230159 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2695 0.39645587571145074 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1924 0.2830356604337036 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1774 0.2609694706909512 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013681037640506464 0.0 2 0.0 0.0 0.0 0.05413571883555246 0.0 3 0.0 0.0 0.0 0.06355062645912679 0.0 4 0.0 0.0 0.0 0.09635569521001863 0.0 5 0.0 0.0 0.0 0.15210960129337295 0.0 6 0.0 0.0 0.0 0.2186023863848667 0.0 7 0.0 0.0 0.0 0.25773309619534757 0.0 8 0.0 0.0 0.0 0.517084379638497 0.0 9 0.0 0.0 0.0 0.6224136586772349 0.0 10 0.0 0.0 0.0 0.7971778814398336 0.0 11 0.0 0.0 0.0 1.000481042936392 0.0 12 0.0 0.0 0.0 1.1615642280584841 0.0 13 0.0 0.0 0.0 1.228939660739688 0.0 14 0.0 0.0 0.0 1.2502703108243487 0.0 15 0.0 0.0 0.0 1.290872099951013 0.0 16 0.0 0.0 0.0 1.3872277951610317 0.0 17 0.0 0.0 0.0 1.4982942835328852 0.0 18 0.0 0.0 0.0 1.6665857573042766 0.0 19 0.0 0.0 0.0 1.7394041834553593 0.0 20 0.0 0.0 0.0 1.8223730568881082 0.0 21 0.0 0.0 0.0 1.924613069362861 0.0 22 0.0 0.0 0.0 2.0250877866581933 0.0 23 0.0 0.0 0.0 2.151453499918355 0.0 24 0.0 0.0 0.0 2.236040560598906 0.0 25 0.0 0.0 0.0 2.3032688853484915 0.0 26 0.0 0.0 0.0 2.3775583908157576 0.0 27 0.0 0.0 0.0 2.437872642779281 0.0 28 0.0 0.0 0.0 2.5098084213406535 0.0 29 0.0 0.0 0.0 2.580861552312316 0.0 30 0.0 0.0 0.0 2.6833957806503053 0.0 31 0.0 0.0 0.0 2.7859300089882946 0.0 32 0.0 0.0 0.0 2.8627203492930726 0.0 33 0.0 0.0 0.0 2.952603295511884 0.0 34 0.0 0.0 0.0 3.054990415918255 0.0 35 0.0 0.0 0.0 3.1938603033659767 0.0 36 0.0 0.0 0.0 3.297718503088531 0.0 37 0.0 0.0 0.0 3.407313912144201 0.0 38 0.0 0.0 0.0 3.5023456359696548 0.0 39 0.0 0.0 0.0 3.597818683589963 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 30 2.1641881E-6 45.000004 1 ATAGCGG 45 3.8380676E-10 45.000004 2 CGCGAAG 30 2.1641881E-6 45.000004 2 TCGATAA 45 3.8380676E-10 45.000004 1 TCGTGAA 30 2.1641881E-6 45.000004 1 CCAAATC 30 2.1641881E-6 45.000004 18 CTTAGCC 30 2.1641881E-6 45.000004 27 CGCTTAG 30 2.1641881E-6 45.000004 25 CTTAACG 20 7.03125E-4 45.0 1 AGCGTAA 20 7.03125E-4 45.0 1 CTCACGA 20 7.03125E-4 45.0 24 TCGTTAA 35 1.2109558E-7 45.0 1 CGTATAA 25 3.889118E-5 45.0 11 GATAACC 20 7.03125E-4 45.0 9 GATCGGA 20 7.03125E-4 45.0 10 GTCGAAC 20 7.03125E-4 45.0 15 CGACGTG 20 7.03125E-4 45.0 12 ACGCATG 20 7.03125E-4 45.0 25 GCGCGAC 80 0.0 45.0 9 ATAATCG 20 7.03125E-4 45.0 40 >>END_MODULE