SRR1546378_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546378_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	353389
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	884	0.2501492689359318	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	818	0.2314729660515749	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	652	0.18449923455455602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAAG	35	1.2087366E-7	45.000004	2
GCGATAT	70	0.0	45.000004	9
TAGGCGA	70	0.0	45.000004	6
ACTATTC	20	7.026649E-4	45.0	17
GTACCCG	20	7.026649E-4	45.0	26
ACACGTG	20	7.026649E-4	45.0	42
ACACGGG	20	7.026649E-4	45.0	3
ACGTTAG	20	7.026649E-4	45.0	2
GGACTAT	20	7.026649E-4	45.0	8
TTGTATA	20	7.026649E-4	45.0	1
CACGATC	20	7.026649E-4	45.0	19
CACCTTG	20	7.026649E-4	45.0	42
CCACTCG	20	7.026649E-4	45.0	32
GTTAATA	45	3.8380676E-10	45.0	1
GATATAC	20	7.026649E-4	45.0	11
CGGGATC	20	7.026649E-4	45.0	6
TGTTACG	20	7.026649E-4	45.0	1
TTAACGA	20	7.026649E-4	45.0	1
TTACGGG	110	0.0	45.0	3
ACGTAAG	20	7.026649E-4	45.0	2