SRR1546377_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546377_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1457746
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6799	0.46640498413303827	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5541	0.3801073712430012	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATTA	30	2.1659034E-6	45.000004	19
GGTACGT	30	2.1659034E-6	45.000004	9
GTCGATG	65	0.0	45.000004	1
CGTTCCA	30	2.1659034E-6	45.000004	38
TTACGTA	30	2.1659034E-6	45.000004	36
ACGTAAG	30	2.1659034E-6	45.000004	1
TAGCTAC	30	2.1659034E-6	45.000004	44
GACTAAC	30	2.1659034E-6	45.000004	28
GTCATCG	20	7.0339104E-4	45.0	43
AGGTACG	105	0.0	45.0	1
GCGACTT	20	7.0339104E-4	45.0	24
CGAGTTA	25	3.8913226E-5	45.0	27
GATCGGT	25	3.8913226E-5	45.0	27
CGTGACC	20	7.0339104E-4	45.0	36
ATGTGCG	90	0.0	45.0	1
CGTTGAT	140	0.0	45.0	25
ATTACGT	35	1.2122291E-7	45.0	30
TATGCGT	20	7.0339104E-4	45.0	1
TCGATAT	25	3.8913226E-5	45.0	34
ACGGGTA	105	0.0	45.0	5