##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546377_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1457746 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.141266036744398 31.0 31.0 33.0 30.0 34.0 2 31.466077766634243 31.0 31.0 34.0 30.0 34.0 3 31.51635470102473 31.0 31.0 34.0 30.0 34.0 4 35.36223457310121 37.0 35.0 37.0 33.0 37.0 5 35.2626308012507 37.0 35.0 37.0 33.0 37.0 6 35.30537418727268 37.0 35.0 37.0 32.0 37.0 7 35.78240516523455 37.0 35.0 37.0 35.0 37.0 8 35.712510958699255 37.0 35.0 37.0 35.0 37.0 9 37.48883481758825 39.0 37.0 39.0 35.0 39.0 10 36.98604695193813 39.0 37.0 39.0 32.0 39.0 11 36.633401154933715 39.0 35.0 39.0 32.0 39.0 12 35.577778982072324 37.0 35.0 39.0 31.0 39.0 13 35.05307508989906 37.0 35.0 39.0 30.0 39.0 14 35.8799324436493 38.0 35.0 40.0 29.0 41.0 15 36.3023091814349 38.0 35.0 40.0 31.0 41.0 16 36.50328520880867 38.0 35.0 40.0 32.0 41.0 17 36.461000064483116 37.0 35.0 40.0 32.0 41.0 18 36.36639784983118 37.0 35.0 40.0 31.0 41.0 19 36.22540209336881 37.0 35.0 40.0 31.0 41.0 20 35.99763950647095 36.0 34.0 40.0 31.0 41.0 21 35.82813261020782 36.0 34.0 40.0 30.0 41.0 22 35.708868348806995 36.0 34.0 40.0 30.0 41.0 23 35.70126963133495 35.0 34.0 40.0 30.0 41.0 24 35.66977031663952 35.0 34.0 40.0 30.0 41.0 25 35.58792341052556 35.0 34.0 40.0 30.0 41.0 26 35.445811547416355 35.0 34.0 40.0 30.0 41.0 27 35.30823339594141 35.0 34.0 40.0 29.0 41.0 28 35.3150884996426 36.0 34.0 40.0 29.0 41.0 29 35.297693150933014 36.0 34.0 40.0 29.0 41.0 30 35.13250525125776 36.0 34.0 40.0 29.0 41.0 31 34.84003454648478 35.0 34.0 40.0 28.0 41.0 32 34.59670271775742 35.0 34.0 40.0 27.0 41.0 33 34.32626054195998 35.0 33.0 40.0 25.0 41.0 34 34.10955475096485 35.0 33.0 40.0 24.0 41.0 35 33.87172731051912 35.0 33.0 40.0 23.0 41.0 36 33.60427125164466 35.0 33.0 40.0 22.0 41.0 37 33.40263255738654 35.0 33.0 39.0 22.0 41.0 38 33.36068149046542 35.0 32.0 39.0 22.0 41.0 39 33.36765184058128 35.0 33.0 39.0 22.0 41.0 40 33.09059328579876 35.0 32.0 39.0 20.0 41.0 41 33.04164923107318 35.0 32.0 39.0 20.0 41.0 42 32.91330176862087 35.0 32.0 39.0 20.0 41.0 43 32.80418879557893 35.0 32.0 39.0 19.0 41.0 44 32.623185383461866 35.0 31.0 39.0 18.0 41.0 45 32.59103780768392 35.0 31.0 39.0 18.0 41.0 46 32.525308935850276 35.0 31.0 38.0 18.0 40.0 47 32.444430648412 35.0 31.0 38.0 18.0 40.0 48 32.3872800885751 35.0 31.0 38.0 18.0 40.0 49 32.39883011169298 35.0 31.0 38.0 18.0 40.0 50 32.215457288169546 35.0 31.0 38.0 18.0 40.0 51 31.980718177240753 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 7.0 12 3.0 13 3.0 14 16.0 15 54.0 16 191.0 17 476.0 18 1074.0 19 2201.0 20 3831.0 21 6101.0 22 9209.0 23 13074.0 24 18756.0 25 25718.0 26 32750.0 27 36420.0 28 38230.0 29 41730.0 30 47994.0 31 56586.0 32 69935.0 33 90553.0 34 159360.0 35 231325.0 36 96977.0 37 114268.0 38 155997.0 39 204873.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.66450122312117 23.410799961035735 30.272146176357197 14.652552639485892 2 31.02515801792631 25.399418005605916 31.229377408684368 12.346046567783414 3 28.31583828732852 25.078854615275915 32.76188032757422 13.843426769821354 4 26.046032710774032 27.376442809652712 31.346064403538065 15.231460076035194 5 21.537839925473985 31.920238505199123 32.16911588164193 14.372805687684961 6 19.493519447146486 40.348661563811525 28.693956285937332 11.463862703104656 7 85.49184837413377 4.654308775328487 8.107036479606187 1.7468063709315615 8 87.05659284950876 3.268127643636134 7.470917430059833 2.2043620767952716 9 83.38866990545678 4.45777247888178 9.431752856807702 2.7218047588537373 10 54.26411734280183 20.026602714053066 13.59331461036422 12.115965332780883 11 47.76284757426877 18.66106989832248 19.518420904602035 14.057661622806716 12 42.430162730681474 18.562698851514597 25.592524349235052 13.414614068568872 13 21.05119821971729 41.623163431763835 24.87587000753218 12.4497683409867 14 14.16220658468622 44.59302237838416 29.09697574200169 12.147795294927922 15 11.684751664556101 21.612475698784287 53.31978273306872 13.382989903590886 16 14.14128387249905 15.701089215816747 50.6708987711165 19.4867281405677 17 14.381654965954288 16.258662345840772 29.679450329481266 39.68023235872367 18 20.85637689967937 20.836208777112063 36.58710090783991 21.720313415368658 19 29.547602943173914 22.72487799657828 25.970367951618456 21.75715110862935 20 31.667382383487936 21.53749693019223 24.461394509057133 22.333726177262704 21 21.731220665328525 27.185325838657764 28.930623030349594 22.152830465664113 22 21.394605095812302 23.218996999477277 25.983195975156164 29.403201929554257 23 18.400187687018178 30.44501579836268 24.902623639509216 26.25217287510993 24 20.664573938120906 23.157738042155493 38.73102721598961 17.446660803733984 25 17.784648354377236 22.29585949815674 37.13520736808745 22.784284779378574 26 15.80762355033044 33.67500236666744 28.460307900004526 22.057066182997588 27 18.179984716130246 32.255344895475616 29.232596076408374 20.332074311985764 28 14.946705393120613 26.726192354497975 40.47577561523064 17.85132663715078 29 15.320913245517396 22.805619085903857 39.46455692555493 22.408910743023817 30 18.822483477917277 27.847581128673994 33.95907105901851 19.370864334390216 31 29.8501247816835 24.73894629105482 25.56577071725801 19.845158210003664 32 30.747949231210374 25.065546398343745 25.781103155144997 18.40540121530088 33 28.621721479599326 25.222089444937595 25.02651353527981 21.129675540183268 34 19.224268150967315 26.293469507033464 29.235683033944188 25.24657930805504 35 19.800294427149858 24.298540349278955 31.56249442632667 24.338670797244514 36 32.165754527880715 21.049620441421208 27.670252568005676 19.1143724626924 37 21.01250835193511 29.887031074000546 29.338650217527608 19.761810356536735 38 20.558725594170728 31.653456775048603 23.759557563526158 24.028260067254514 39 20.494585476482186 29.1096665674267 26.695391378196202 23.700356577894915 40 24.23419443442136 24.509962640953912 25.31216000592696 25.943682918697768 41 17.568012534419577 22.12930098933559 27.891896119076986 32.41079035716785 42 23.193135155232806 24.67871631957831 24.26787657108989 27.860271954098998 43 22.8179669160471 24.60613851795855 26.23125016292276 26.344644403071594 44 20.285358354610477 28.148936783225608 29.362248292912486 22.203456569251433 45 17.473140039485617 35.41295945932968 23.22661149473228 23.887289006452427 46 23.424108177967902 29.506992301813895 26.657456100033887 20.411443420184312 47 22.314861436766076 26.3450559974097 27.284794470367263 24.05528809545696 48 24.19296640155418 21.712355924831897 30.75268256609862 23.341995107515302 49 21.129126747732457 20.976768243576043 33.802185017142904 24.091919991548597 50 20.0134316952336 30.6200805901714 27.043188593897703 22.323299120697296 51 18.98211348204694 32.94366782690537 24.112225312228606 23.96199337881908 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 897.0 1 1239.0 2 1581.0 3 6758.0 4 11935.0 5 9101.0 6 6267.0 7 6996.0 8 7725.0 9 8247.5 10 8770.0 11 8997.0 12 9224.0 13 8853.0 14 8482.0 15 8093.5 16 7705.0 17 7520.5 18 7336.0 19 6917.0 20 6498.0 21 6066.0 22 5634.0 23 6247.0 24 6860.0 25 6619.0 26 6257.5 27 6137.0 28 7303.5 29 8470.0 30 11311.5 31 14153.0 32 15743.0 33 17333.0 34 20771.5 35 24210.0 36 26299.0 37 28388.0 38 38330.0 39 48272.0 40 72533.0 41 96794.0 42 120350.5 43 143907.0 44 146723.0 45 149539.0 46 146857.0 47 144175.0 48 137628.5 49 131082.0 50 121480.0 51 111878.0 52 102452.5 53 93027.0 54 83429.0 55 73831.0 56 69454.0 57 65077.0 58 59314.5 59 53552.0 60 48516.5 61 43481.0 62 40759.5 63 38038.0 64 32451.0 65 26864.0 66 21359.5 67 15855.0 68 13063.0 69 10271.0 70 9345.0 71 8419.0 72 6832.0 73 5245.0 74 4037.0 75 1891.0 76 953.0 77 616.5 78 280.0 79 218.0 80 156.0 81 156.0 82 156.0 83 102.5 84 49.0 85 31.5 86 14.0 87 12.5 88 11.0 89 6.0 90 1.0 91 2.5 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1457746.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.653761673255193 #Duplication Level Percentage of deduplicated Percentage of total 1 82.56625310730514 17.053037139319464 2 7.247514804380353 2.9937688698612113 3 2.4038066604528288 1.4894294962072858 4 1.1836686697985879 0.9778884242447612 5 0.7163198816745563 0.7397350058960322 6 0.4725944052085507 0.5856511327974719 7 0.34581366115613926 0.499964705861231 8 0.27674937855653325 0.45727325663424956 9 0.22986301662051536 0.42727823664980596 >10 2.3524233102742027 10.991303221243479 >50 0.8022713297721192 12.228546311054474 >100 1.3916951386480032 49.20086285807122 >500 0.009690074194667954 1.349471996149283 >1k 6.682809789426174E-4 0.15417410450023003 >5k 6.682809789426174E-4 0.8516152415097755 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6799 0.46640498413303827 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5541 0.3801073712430012 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07820292424057415 0.0 2 0.0 0.0 0.0 0.3495807911666367 0.0 3 0.0 0.0 0.0 0.5261547622150909 0.0 4 0.0 0.0 0.0 0.8119384309749436 0.0 5 0.0 0.0 0.0 1.3366526130066554 0.0 6 0.0 0.0 0.0 1.870490469533101 0.0 7 0.0 0.0 0.0 2.1677301807036344 0.0 8 0.0 0.0 0.0 2.9394695646566684 0.0 9 0.0 0.0 0.0 3.255162421985723 0.0 10 0.0 0.0 0.0 3.7912640473717643 0.0 11 0.0 0.0 0.0 4.252181106996692 0.0 12 0.0 0.0 0.0 4.678455643164173 0.0 13 0.0 0.0 0.0 4.85468661893087 0.0 14 0.0 0.0 0.0 4.921502099817115 0.0 15 0.0 0.0 0.0 5.020970731526617 0.0 16 0.0 0.0 0.0 5.255510905191988 0.0 17 0.0 0.0 0.0 5.530524522104674 0.0 18 0.0 0.0 0.0 6.0259469070743465 0.0 19 0.0 0.0 0.0 6.178236812174411 0.0 20 0.0 0.0 0.0 6.3916484764835575 0.0 21 0.0 0.0 0.0 6.577003126744988 0.0 22 0.0 0.0 0.0 6.7452766119749255 0.0 23 0.0 0.0 0.0 6.947849625380553 0.0 24 0.0 0.0 0.0 7.077501841884663 0.0 25 0.0 0.0 0.0 7.1811550160316 0.0 26 0.0 0.0 0.0 7.293108675997053 0.0 27 0.0 0.0 0.0 7.408286491611022 0.0 28 6.859905635138084E-5 0.0 0.0 7.545759000539189 0.0 29 6.859905635138084E-5 0.0 0.0 7.668757108577214 0.0 30 6.859905635138084E-5 0.0 0.0 7.838745570215936 6.859905635138084E-5 31 6.859905635138084E-5 0.0 0.0 8.005235479980737 6.859905635138084E-5 32 6.859905635138084E-5 0.0 0.0 8.136465474780929 6.859905635138084E-5 33 6.859905635138084E-5 0.0 0.0 8.267558271468417 6.859905635138084E-5 34 6.859905635138084E-5 0.0 0.0 8.414909044511184 6.859905635138084E-5 35 6.859905635138084E-5 0.0 0.0 8.601704274955994 6.859905635138084E-5 36 6.859905635138084E-5 0.0 0.0 8.746379684801056 6.859905635138084E-5 37 6.859905635138084E-5 0.0 0.0 8.8926328729422 6.859905635138084E-5 38 6.859905635138084E-5 0.0 0.0 9.018580740403335 6.859905635138084E-5 39 6.859905635138084E-5 0.0 0.0 9.16737209362948 6.859905635138084E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCATTA 30 2.1659034E-6 45.000004 19 GGTACGT 30 2.1659034E-6 45.000004 9 GTCGATG 65 0.0 45.000004 1 CGTTCCA 30 2.1659034E-6 45.000004 38 TTACGTA 30 2.1659034E-6 45.000004 36 ACGTAAG 30 2.1659034E-6 45.000004 1 TAGCTAC 30 2.1659034E-6 45.000004 44 GACTAAC 30 2.1659034E-6 45.000004 28 GTCATCG 20 7.0339104E-4 45.0 43 AGGTACG 105 0.0 45.0 1 GCGACTT 20 7.0339104E-4 45.0 24 CGAGTTA 25 3.8913226E-5 45.0 27 GATCGGT 25 3.8913226E-5 45.0 27 CGTGACC 20 7.0339104E-4 45.0 36 ATGTGCG 90 0.0 45.0 1 CGTTGAT 140 0.0 45.0 25 ATTACGT 35 1.2122291E-7 45.0 30 TATGCGT 20 7.0339104E-4 45.0 1 TCGATAT 25 3.8913226E-5 45.0 34 ACGGGTA 105 0.0 45.0 5 >>END_MODULE