SRR1546376_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546376_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1670262
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8694	0.5205171404246759	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6769	0.4052657607010158	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG	4595	0.27510654017154196	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	2925	0.17512222633335367	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	2626	0.15722084319705532	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2053	0.1229148480897009	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	1684	0.10082250569072397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGC	25	3.8915674E-5	45.0	16
GCGCGTT	20	7.034207E-4	45.0	11
AACCACG	20	7.034207E-4	45.0	1
ACTTACG	25	3.8915674E-5	45.0	1
TTATACG	40	6.8175723E-9	45.0	1
TAACCGA	20	7.034207E-4	45.0	20
CGGATGT	25	3.8915674E-5	45.0	45
CGCTAAG	25	3.8915674E-5	45.0	35
TTGCGTA	25	3.8915674E-5	45.0	15
TACCTCG	20	7.034207E-4	45.0	21
GTCCGAT	20	7.034207E-4	45.0	9
CTACCGT	40	6.8175723E-9	45.0	38
ACATGCG	20	7.034207E-4	45.0	1
ACCCGTG	25	3.8915674E-5	45.0	14
CACGTTA	20	7.034207E-4	45.0	43
CGCAATA	25	3.8915674E-5	45.0	42
TATCGGC	25	3.8915674E-5	45.0	44
AGTACGG	205	0.0	45.0	2
GCCCGTA	20	7.034207E-4	45.0	9
CATGCGT	30	2.1660962E-6	44.999996	25