##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546376_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1670262 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.152479072145567 31.0 31.0 33.0 30.0 34.0 2 31.482242306895564 31.0 31.0 34.0 30.0 34.0 3 31.54738837380004 31.0 31.0 34.0 30.0 34.0 4 35.408996911861735 37.0 35.0 37.0 33.0 37.0 5 35.293143231421176 37.0 35.0 37.0 33.0 37.0 6 35.35626207145945 37.0 35.0 37.0 33.0 37.0 7 35.756100539915295 37.0 35.0 37.0 35.0 37.0 8 35.65293708412213 37.0 35.0 37.0 35.0 37.0 9 37.435477188608736 39.0 37.0 39.0 35.0 39.0 10 36.9516962009553 39.0 37.0 39.0 32.0 39.0 11 36.6149610061176 39.0 35.0 39.0 32.0 39.0 12 35.67404993947057 37.0 35.0 39.0 31.0 39.0 13 35.22438216279841 37.0 35.0 39.0 30.0 39.0 14 36.12007996350273 38.0 35.0 40.0 30.0 41.0 15 36.44748488560477 38.0 35.0 40.0 31.0 41.0 16 36.60894817699259 38.0 35.0 40.0 32.0 41.0 17 36.517259567660645 38.0 35.0 40.0 31.0 41.0 18 36.45657926720479 38.0 35.0 40.0 31.0 41.0 19 36.32318582354146 37.0 35.0 40.0 31.0 41.0 20 36.089236898163286 36.0 35.0 40.0 31.0 41.0 21 35.97896916771141 36.0 34.0 40.0 31.0 41.0 22 35.83415116909802 36.0 34.0 40.0 30.0 41.0 23 35.80724760546549 36.0 34.0 40.0 30.0 41.0 24 35.81247971875071 36.0 34.0 40.0 30.0 41.0 25 35.774041437810354 36.0 34.0 40.0 30.0 41.0 26 35.62156356308172 36.0 34.0 40.0 30.0 41.0 27 35.48867962032304 36.0 34.0 40.0 30.0 41.0 28 35.44129723360766 36.0 34.0 40.0 29.0 41.0 29 35.38324765815184 36.0 34.0 40.0 29.0 41.0 30 35.2404383264422 36.0 34.0 40.0 29.0 41.0 31 35.001654830200295 36.0 34.0 40.0 28.0 41.0 32 34.74877414441567 35.0 34.0 40.0 27.0 41.0 33 34.53659904853251 35.0 33.0 40.0 25.0 41.0 34 34.28999342618104 35.0 33.0 40.0 24.0 41.0 35 34.102871286061706 35.0 33.0 40.0 23.0 41.0 36 33.8452362563478 35.0 33.0 40.0 23.0 41.0 37 33.683916654991855 35.0 33.0 40.0 23.0 41.0 38 33.622811271525066 35.0 33.0 40.0 23.0 41.0 39 33.61212252927984 35.0 33.0 40.0 23.0 41.0 40 33.38380924669303 35.0 32.0 40.0 22.0 41.0 41 33.30125692855373 35.0 32.0 39.0 21.0 41.0 42 33.191450802329214 35.0 32.0 39.0 21.0 41.0 43 33.0811573274133 35.0 32.0 39.0 21.0 41.0 44 32.84444536246409 35.0 32.0 39.0 19.0 41.0 45 32.861037968893505 35.0 32.0 39.0 20.0 41.0 46 32.77856168672939 35.0 32.0 39.0 20.0 41.0 47 32.72826778074338 35.0 32.0 39.0 20.0 41.0 48 32.684858423409025 35.0 32.0 39.0 20.0 41.0 49 32.7258657623774 35.0 32.0 39.0 20.0 40.0 50 32.5453916810656 35.0 31.0 38.0 18.0 40.0 51 32.316007309032955 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 0.0 11 1.0 12 4.0 13 4.0 14 27.0 15 70.0 16 176.0 17 512.0 18 1165.0 19 2433.0 20 4131.0 21 6709.0 22 10117.0 23 14483.0 24 20019.0 25 27531.0 26 34777.0 27 39367.0 28 42157.0 29 46535.0 30 54052.0 31 64778.0 32 79478.0 33 102340.0 34 177951.0 35 248251.0 36 114272.0 37 138072.0 38 187224.0 39 253574.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.392089384779155 23.108889503562914 28.051527245426165 14.447493866231763 2 30.87054605804359 26.881650902672753 29.550633373686285 12.697169665597375 3 28.372854079180392 26.223251202505953 32.02270063020053 13.381194088113121 4 26.464410972649798 26.135839766455803 32.60416629247388 14.795582968420524 5 22.657523190972434 32.236619165136965 30.502220609700753 14.603637034189845 6 20.222755471896026 41.77488322191369 27.36127625486301 10.641085051327277 7 84.56637341925997 4.742788855880095 8.888665371061547 1.8021723537983863 8 85.67997116620027 4.637416165847035 7.407460625937727 2.275152042014965 9 82.09646151322367 4.752428062184256 8.975597840338821 4.17551258425325 10 52.406867904556286 20.83553358694624 14.358346175629933 12.399252332867539 11 45.98739598937173 19.15268383044097 19.994048837846996 14.865871342340304 12 40.4871810530324 18.86039435729245 25.373264793188135 15.279159796487018 13 23.050156203038803 37.291514744393396 25.95688580593943 13.701443246628372 14 16.760364541610837 40.642845254217605 27.4865859368171 15.110204267354463 15 14.63351258664808 21.23415368367358 48.356724873103744 15.775608856574596 16 15.966776469799349 16.342046936348908 45.36192525484026 22.329251339011485 17 16.506931247912004 17.6760891405061 29.344498048809108 36.472481562772785 18 21.773889365859965 21.589247674915672 34.75688245317202 21.879980506052345 19 28.861160704129052 23.657366329354318 25.948384145720848 21.53308882079578 20 30.52233721416161 21.81106916160459 25.763323358850286 21.903270265383515 21 22.857372076955592 27.810127991895882 27.467726620135046 21.864773311013483 22 22.086295443469346 22.940293199510016 25.97137455081897 29.002036806201666 23 20.168871709947304 29.297319821680674 24.60033216345699 25.933476304915036 24 21.316715581148348 23.16612603292178 36.86212103250867 18.6550373534212 25 18.835009118329936 23.471527221477828 34.72568974208837 22.967773918103866 26 17.18407052306764 31.595881364720025 27.7009235676798 23.519124544532534 27 19.259253937406225 30.801874196982272 28.62664659795888 21.31222526765262 28 16.05628338548084 26.96115938697043 38.190894602164214 18.791662625384518 29 17.503960456503233 23.92451004692677 36.337712287054366 22.23381720951563 30 19.85059828937017 28.60994263175478 32.2430253457242 19.29643373315085 31 29.5587758088252 24.053531721370657 24.079994635572145 22.307697834231995 32 29.339768251926944 25.59251183347283 25.597481113741438 19.470238800858787 33 27.780132697744424 25.555691262807873 25.241968026573076 21.422208012874627 34 18.58103698701162 26.7102406688292 29.57446197063694 25.13426037352224 35 20.996945389405973 23.78333459062111 30.951192088426843 24.268527931546068 36 30.0905486684125 23.88697102610249 26.7886714778879 19.233808827597105 37 20.853674453468976 30.148982614703563 27.71247864107547 21.28486429075199 38 20.73997971575717 31.058660258091248 23.768726104048348 24.43263392210324 39 20.55605647497219 27.924241825533958 27.10299342258879 24.416708276905062 40 23.28550850106151 23.948817610650305 25.70249457869484 27.063179309593345 41 18.044115234615887 22.20298372351164 27.621774308461788 32.13112673341069 42 21.73790698704754 24.183451458513694 24.88112643405645 29.197515120382313 43 22.513114708949853 24.46370689149367 25.91701182209737 27.106166577459106 44 20.20263886743517 27.757262034339526 28.39033636639042 23.649762731834887 45 18.838960594206178 33.06020253109991 24.119030427561665 23.981806447132247 46 23.138884797714372 29.296840854907792 26.604089657790215 20.96018468958762 47 22.139460755258757 25.941738481747173 27.814917659624655 24.103883103369412 48 22.853839697005622 23.095717917308782 30.169578185937297 23.880864199748302 49 21.598288172753737 21.43352360288386 32.56141850799455 24.40676971636785 50 20.59509226696171 28.27568369513286 28.234552423512 22.89467161439343 51 19.242190746122464 29.70965034228163 25.4694173728433 25.578741538752602 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 895.0 1 1458.5 2 2022.0 3 8985.0 4 15948.0 5 11895.0 6 7842.0 7 8160.0 8 8478.0 9 8796.0 10 9114.0 11 9118.0 12 9122.0 13 8808.5 14 8495.0 15 7927.0 16 7359.0 17 6963.5 18 6568.0 19 6132.5 20 5697.0 21 5809.0 22 5921.0 23 5429.0 24 4937.0 25 5612.0 26 8317.5 27 10348.0 28 10830.0 29 11312.0 30 15153.5 31 18995.0 32 20728.0 33 22461.0 34 25542.0 35 28623.0 36 30157.0 37 31691.0 38 38241.0 39 44791.0 40 71321.0 41 97851.0 42 121309.5 43 144768.0 44 150347.0 45 155926.0 46 160800.0 47 165674.0 48 155241.5 49 144809.0 50 137703.5 51 130598.0 52 120457.0 53 110316.0 54 100230.5 55 90145.0 56 83721.0 57 77297.0 58 74097.0 59 70897.0 60 66485.5 61 62074.0 62 54083.5 63 46093.0 64 42523.0 65 38953.0 66 32599.0 67 26245.0 68 20789.0 69 15333.0 70 12976.0 71 10619.0 72 8793.5 73 6968.0 74 5629.5 75 3283.5 76 2276.0 77 1762.0 78 1248.0 79 825.5 80 403.0 81 352.5 82 302.0 83 248.0 84 194.0 85 116.5 86 39.0 87 31.0 88 23.0 89 14.0 90 5.0 91 5.5 92 6.0 93 3.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1670262.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.39812224823601 #Duplication Level Percentage of deduplicated Percentage of total 1 81.76953846317781 16.679450417537375 2 7.509498682567632 3.063593442999636 3 2.459155803441048 1.504864821181486 4 1.2146647773331476 0.9910752247467165 5 0.7515376604489419 0.7664978535995399 6 0.5025090683789052 0.6150144844584057 7 0.377069561099171 0.5384057702372711 8 0.31367311339892967 0.5118674010476931 9 0.2346745351481759 0.4308227870850405 >10 2.5662684091335604 12.064829423741939 >50 0.948021645912535 14.265390361955015 >100 1.3383309496202014 44.76547803176628 >500 0.010038220226573918 1.3097467120233464 >1k 0.004428626570547317 1.5617229968819855 >5k 5.904835427396423E-4 0.931240270738321 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8694 0.5205171404246759 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6769 0.4052657607010158 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG 4595 0.27510654017154196 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC 2925 0.17512222633335367 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC 2626 0.15722084319705532 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2053 0.1229148480897009 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1684 0.10082250569072397 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11956208067955806 0.0 2 0.0 0.0 0.0 0.3752105957029496 0.0 3 0.0 0.0 0.0 0.5181223065602881 0.0 4 0.0 0.0 0.0 0.7805960980971848 0.0 5 0.0 0.0 0.0 1.366312590479817 0.0 6 0.0 0.0 0.0 1.7817563951044806 0.0 7 0.0 0.0 0.0 2.092905184935058 0.0 8 0.0 0.0 0.0 2.8102177981657968 0.0 9 0.0 0.0 0.0 3.117894078893012 0.0 10 0.0 0.0 0.0 3.9336942347966968 0.0 11 0.0 0.0 0.0 4.378175400027062 0.0 12 0.0 0.0 0.0 5.020948809228732 0.0 13 0.0 0.0 0.0 5.2089432675831695 0.0 14 0.0 0.0 0.0 5.280069833355485 0.0 15 0.0 0.0 0.0 5.415797042619661 0.0 16 0.0 0.0 0.0 5.66408144351006 0.0 17 0.0 0.0 0.0 5.934937153572314 0.0 18 0.0 0.0 0.0 6.408216196021941 0.0 19 0.0 0.0 0.0 6.591959824267091 0.0 20 0.0 0.0 0.0 6.765106312662325 0.0 21 0.0 0.0 0.0 6.943042468786334 0.0 22 0.0 0.0 0.0 7.113554639930741 0.0 23 0.0 0.0 0.0 7.320528156660452 0.0 24 0.0 0.0 0.0 7.470803981650783 0.0 25 0.0 0.0 0.0 7.582403239731252 0.0 26 0.0 0.0 0.0 7.69801384453457 0.0 27 0.0 0.0 0.0 7.821228046857319 0.0 28 0.0 0.0 0.0 7.944083024100411 0.0 29 0.0 0.0 0.0 8.062627300387604 0.0 30 0.0 0.0 0.0 8.230145929201527 0.0 31 0.0 0.0 0.0 8.38395413414183 0.0 32 0.0 0.0 0.0 8.513275162818767 0.0 33 0.0 0.0 0.0 8.652534752032915 0.0 34 0.0 0.0 0.0 8.796584008975838 0.0 35 0.0 0.0 0.0 8.978950607748963 0.0 36 0.0 0.0 0.0 9.120365547441061 0.0 37 0.0 0.0 0.0 9.268306409413613 0.0 38 0.0 0.0 0.0 9.41924081371665 0.0 39 0.0 0.0 0.0 9.56795999669513 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGC 25 3.8915674E-5 45.0 16 GCGCGTT 20 7.034207E-4 45.0 11 AACCACG 20 7.034207E-4 45.0 1 ACTTACG 25 3.8915674E-5 45.0 1 TTATACG 40 6.8175723E-9 45.0 1 TAACCGA 20 7.034207E-4 45.0 20 CGGATGT 25 3.8915674E-5 45.0 45 CGCTAAG 25 3.8915674E-5 45.0 35 TTGCGTA 25 3.8915674E-5 45.0 15 TACCTCG 20 7.034207E-4 45.0 21 GTCCGAT 20 7.034207E-4 45.0 9 CTACCGT 40 6.8175723E-9 45.0 38 ACATGCG 20 7.034207E-4 45.0 1 ACCCGTG 25 3.8915674E-5 45.0 14 CACGTTA 20 7.034207E-4 45.0 43 CGCAATA 25 3.8915674E-5 45.0 42 TATCGGC 25 3.8915674E-5 45.0 44 AGTACGG 205 0.0 45.0 2 GCCCGTA 20 7.034207E-4 45.0 9 CATGCGT 30 2.1660962E-6 44.999996 25 >>END_MODULE