SRR1546375_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546375_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	876910
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4623	0.5271920721624795	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3390	0.38658471222816476	No Hit
ACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCTTGTCGGCT	1425	0.16250242328175069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.0323696E-4	45.000004	1
GTCATAG	20	7.0323696E-4	45.000004	1
CTAGAGT	20	7.0323696E-4	45.000004	27
CGAACGG	20	7.0323696E-4	45.000004	2
TCCGCTA	20	7.0323696E-4	45.000004	22
CGAGTCA	20	7.0323696E-4	45.000004	13
TTTCGAT	20	7.0323696E-4	45.000004	36
CGTTGAT	40	6.8121153E-9	45.000004	25
GACCGAC	20	7.0323696E-4	45.000004	9
CCGTGAC	20	7.0323696E-4	45.000004	45
ATTCGGC	20	7.0323696E-4	45.000004	17
TGTATCG	20	7.0323696E-4	45.000004	1
CACTGAT	20	7.0323696E-4	45.000004	33
TAACGCG	20	7.0323696E-4	45.000004	1
GACCCTA	20	7.0323696E-4	45.000004	38
ACTTAAC	135	0.0	45.000004	35
TCGATAG	35	1.2114833E-7	45.000004	1
GTGGACG	20	7.0323696E-4	45.000004	1
CCCGTTC	20	7.0323696E-4	45.000004	17
TCTACCA	20	7.0323696E-4	45.000004	27