##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546374_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1535408 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.125642174588123 31.0 31.0 33.0 30.0 34.0 2 31.460098553609203 31.0 31.0 34.0 30.0 34.0 3 31.51864325312881 31.0 31.0 34.0 30.0 34.0 4 35.37361014140867 37.0 35.0 37.0 33.0 37.0 5 35.273632155101446 37.0 35.0 37.0 33.0 37.0 6 35.317649119973325 37.0 35.0 37.0 32.0 37.0 7 35.793528495357585 37.0 35.0 37.0 35.0 37.0 8 35.70984389816908 37.0 35.0 37.0 35.0 37.0 9 37.463678058209936 39.0 37.0 39.0 35.0 39.0 10 36.89709770953388 39.0 37.0 39.0 32.0 39.0 11 36.596190719339745 39.0 35.0 39.0 32.0 39.0 12 35.98014990152455 37.0 35.0 39.0 31.0 39.0 13 35.69312130717047 37.0 35.0 39.0 30.0 39.0 14 36.54629648927191 38.0 35.0 41.0 31.0 41.0 15 36.81940826151746 38.0 35.0 41.0 31.0 41.0 16 36.920279170096805 38.0 35.0 41.0 32.0 41.0 17 36.87158918020487 38.0 35.0 41.0 32.0 41.0 18 36.791936736033676 38.0 35.0 40.0 31.0 41.0 19 36.67777359503142 38.0 35.0 40.0 31.0 41.0 20 36.5121524702229 38.0 35.0 40.0 31.0 41.0 21 36.36652993862218 38.0 35.0 40.0 31.0 41.0 22 36.26983642132905 38.0 35.0 40.0 30.0 41.0 23 36.22094257682649 38.0 35.0 40.0 30.0 41.0 24 36.20752920396403 38.0 35.0 40.0 30.0 41.0 25 36.136316861707115 38.0 35.0 40.0 30.0 41.0 26 36.02465077686192 38.0 35.0 40.0 30.0 41.0 27 35.888538421058115 38.0 34.0 40.0 30.0 41.0 28 35.84716765836833 37.0 34.0 40.0 30.0 41.0 29 35.756591081979515 37.0 34.0 40.0 30.0 41.0 30 35.58249729062243 37.0 34.0 40.0 29.0 41.0 31 35.35226793139022 37.0 34.0 40.0 28.0 41.0 32 35.17720110876067 37.0 34.0 40.0 27.0 41.0 33 34.975042464283106 37.0 34.0 40.0 26.0 41.0 34 34.74059403103279 37.0 34.0 40.0 25.0 41.0 35 34.55087572814522 37.0 33.0 40.0 24.0 41.0 36 34.32911252253473 37.0 33.0 40.0 23.0 41.0 37 34.118957306461866 36.0 33.0 40.0 23.0 41.0 38 34.0126174932005 36.0 33.0 40.0 23.0 41.0 39 33.95376017319175 36.0 33.0 40.0 23.0 41.0 40 33.694517027395975 36.0 33.0 40.0 21.0 41.0 41 33.59701981492867 36.0 32.0 40.0 21.0 41.0 42 33.49043251044674 36.0 32.0 40.0 21.0 41.0 43 33.44111793086919 35.0 32.0 40.0 21.0 41.0 44 33.28391997436512 35.0 32.0 40.0 20.0 41.0 45 33.271105790773525 35.0 32.0 40.0 20.0 41.0 46 33.19724659504184 35.0 32.0 39.0 20.0 41.0 47 33.10935204193283 35.0 32.0 39.0 20.0 41.0 48 33.0215037306045 35.0 32.0 39.0 20.0 41.0 49 33.01151680856163 35.0 32.0 39.0 20.0 41.0 50 32.853575727103156 35.0 31.0 39.0 20.0 41.0 51 32.631127361587275 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 3.0 11 4.0 12 2.0 13 12.0 14 20.0 15 64.0 16 190.0 17 566.0 18 1202.0 19 2380.0 20 3939.0 21 5958.0 22 8894.0 23 12654.0 24 17451.0 25 24091.0 26 30771.0 27 34699.0 28 37367.0 29 40932.0 30 46992.0 31 55986.0 32 68105.0 33 86848.0 34 138246.0 35 181695.0 36 116689.0 37 146904.0 38 201996.0 39 270700.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.2710159123829 23.140298865187624 27.355465127184438 14.233220095245041 2 32.67483300855538 25.102578598001312 29.437257067828227 12.785331325615083 3 30.062758563196233 25.12706720298448 31.683630670154123 13.126543563665164 4 26.44150610130988 27.792091743692882 30.931322488875924 14.835079666121317 5 22.593603784792055 31.741660848452007 30.417452559840775 15.247282806915166 6 20.5746615883205 41.573054197972134 27.73822983858362 10.114054375123747 7 87.01439617352521 3.779190938174088 7.550305847045215 1.656107041255484 8 88.05288236090993 3.075078415639361 6.940826151745985 1.9312130717047196 9 84.02346477288121 4.4481336556797935 8.81687473297 2.7115268384689934 10 46.277276137678065 25.921448891760367 14.980187676500318 12.821087294061254 11 38.41539186978314 23.976167898044036 22.792378312474597 14.816061919698218 12 35.659577128685015 22.04091681168784 26.90359826183008 15.395907797797067 13 24.825714077300624 31.972739493346392 27.589474589164574 15.612071840188408 14 19.43346654439732 35.10728093119223 29.269809718328936 16.189442806081512 15 17.400716942988442 24.169145920823652 41.428141575398854 17.001995560789055 16 19.72628773589821 19.423827412648624 40.146462699165305 20.70342215228786 17 20.77701822577452 19.542558069255858 29.337088252764087 30.34333545220554 18 23.508800266769484 23.123625772433126 32.772136135802334 20.59543782499505 19 27.865101653762387 24.791716599105907 26.069813365567978 21.273368381563728 20 28.883332638621134 24.594440044600525 25.602120087950563 20.920107228827778 21 24.52813844919396 26.698375936558882 28.89153892646124 19.881946687785916 22 23.74678261413253 23.213699550868565 27.389202088304863 25.650315746694037 23 20.792779508769005 28.558858622594123 26.691081458478788 23.957280410158084 24 21.55615966570449 25.59905901232767 33.91795535779415 18.92682596417369 25 21.556485312047354 24.647520398486915 31.313956941737963 22.482037347727772 26 19.58547825724498 29.754762252118006 27.294829778143658 23.364929712493357 27 20.109117576565968 28.66781988891552 29.616883590550525 21.606178943967986 28 18.53487802590582 27.115854548107084 34.60226858268291 19.74699884330419 29 19.29819305357273 24.73798495253379 34.22920813230099 21.73461386159249 30 22.423811781624167 27.093775726061086 30.68096558048414 19.8014469118306 31 27.857676917145152 25.45864030928587 26.060043975282138 20.62363879828684 32 28.09350999864531 26.701437012181778 25.959158738263703 19.245894250909203 33 26.751781936788138 25.88901451601138 26.281353229890687 21.077850317309796 34 21.169096422579535 27.037048133134643 28.848748997009267 22.945106447276554 35 22.350085449600368 26.070594916790846 29.396551274970562 22.182768358638224 36 28.771961589362565 25.185097381282368 25.837367006033574 20.20557402332149 37 22.244055000364725 29.81884945239311 27.64216416743953 20.294931379802634 38 23.09842074549566 29.732943947146296 24.7501641257568 22.418471181601245 39 22.580968706689035 27.874740785511083 26.13377030730594 23.410520200493938 40 24.576529495743152 25.026963517188918 26.724492773256358 23.672014213811572 41 21.274996613278034 24.140489042651854 27.29274564154935 27.291768702520763 42 24.243328157727458 25.676888488271523 25.435845065285577 24.643938288715443 43 23.74456821900107 26.425875076852538 25.826620676719152 24.00293602742724 44 22.38330137657222 28.214780696726866 26.9061383033044 22.495779623396515 45 20.276174150453823 31.137652011712845 24.873779477506954 23.712394360326375 46 23.272511280389317 28.900266248449924 27.08706741139814 20.740155059762618 47 23.61027166720507 27.14451142627888 27.308311536738117 21.936905369777936 48 23.526385169283994 25.952515552869336 28.175116972166354 22.345982305680316 49 23.017399935391765 24.33034086054 29.719331930014693 22.93292727405354 50 21.65951981492867 28.39134614382627 27.664047601679815 22.285086439565248 51 21.132558902910496 30.261467961610204 25.683661932203037 22.922311203276262 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 646.0 1 1182.0 2 1718.0 3 7916.0 4 14114.0 5 10500.5 6 6887.0 7 7033.0 8 7179.0 9 7362.5 10 7546.0 11 7571.0 12 7596.0 13 7468.5 14 7341.0 15 7037.5 16 6734.0 17 6644.5 18 6555.0 19 6209.5 20 5864.0 21 6056.5 22 6249.0 23 6644.5 24 7040.0 25 7753.0 26 9085.0 27 9704.0 28 11992.5 29 14281.0 30 17195.0 31 20109.0 32 23218.0 33 26327.0 34 33056.0 35 39785.0 36 40652.0 37 41519.0 38 47738.5 39 53958.0 40 68901.5 41 83845.0 42 97614.0 43 111383.0 44 116050.5 45 120718.0 46 124098.0 47 127478.0 48 127205.5 49 126933.0 50 123819.0 51 120705.0 52 112922.5 53 105140.0 54 96413.0 55 87686.0 56 82118.5 57 76551.0 58 72759.5 59 68968.0 60 63187.0 61 57406.0 62 50810.5 63 44215.0 64 39324.0 65 34433.0 66 29679.5 67 24926.0 68 20707.5 69 16489.0 70 13771.5 71 11054.0 72 9574.5 73 8095.0 74 6524.5 75 3589.5 76 2225.0 77 1821.5 78 1418.0 79 986.0 80 554.0 81 452.5 82 351.0 83 242.5 84 134.0 85 97.0 86 60.0 87 47.5 88 35.0 89 30.5 90 26.0 91 16.0 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1535408.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.468810857812095 #Duplication Level Percentage of deduplicated Percentage of total 1 78.60493088211108 19.23369186245769 2 6.888838400155901 3.3712336768689526 3 2.814738755429884 2.0661993066230178 4 1.6037674428678743 1.5696912887780394 5 1.082639607792385 1.324545189512387 6 0.816775746686617 1.1991318755353848 7 0.65406054513137 1.1202858637863877 8 0.5098484906172874 0.9980309026444312 9 0.43024603134373524 0.9474847886946738 >10 4.620465359123225 25.422653786759973 >50 1.5251386369235496 26.945220430627426 >100 0.4424165391941649 13.96164240966937 >500 0.004533502808286971 0.8028027576247204 >1k 0.0013333831789079328 0.5193454562249167 >5k 2.666766357815866E-4 0.5180404041926892 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7939 0.5170612631951897 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2916 0.18991694715671664 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1546 0.10068984921271741 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06799495638944177 0.0 2 0.0 0.0 0.0 0.24234600835738773 0.0 3 0.0 0.0 0.0 0.3227806550441316 0.0 4 0.0 0.0 0.0 0.4264013213426008 0.0 5 0.0 0.0 0.0 0.6680309077456936 0.0 6 0.0 0.0 0.0 0.900086491668664 0.0 7 0.0 0.0 0.0 1.0464970874191095 0.0 8 0.0 0.0 0.0 1.4624777257901482 0.0 9 0.0 0.0 0.0 1.6680256974042078 0.0 10 0.0 0.0 0.0 2.063295228369267 0.0 11 0.0 0.0 0.0 2.413690693288038 0.0 12 0.0 0.0 0.0 2.7298281629377987 0.0 13 0.0 0.0 0.0 2.859435407396601 0.0 14 0.0 0.0 0.0 2.9160327417858967 0.0 15 0.0 0.0 0.0 2.9974443275012246 0.0 16 0.0 0.0 0.0 3.1613095672290363 0.0 17 0.0 0.0 0.0 3.3545481070829384 0.0 18 0.0 0.0 0.0 3.643396413200921 0.0 19 0.0 0.0 0.0 3.7638855600596064 0.0 20 0.0 0.0 0.0 3.8988334045413335 0.0 21 0.0 0.0 0.0 4.051561539343289 0.0 22 0.0 0.0 0.0 4.2116492814939095 0.0 23 0.0 0.0 0.0 4.392969165199087 0.0 24 0.0 0.0 0.0 4.5324760584808725 0.0 25 0.0 0.0 0.0 4.6411768077279785 0.0 26 0.0 0.0 0.0 4.749617039900795 0.0 27 0.0 0.0 0.0 4.883848462428228 0.0 28 0.0 0.0 0.0 5.0139116117670355 0.0 29 0.0 0.0 0.0 5.153483634317393 0.0 30 0.0 0.0 0.0 5.334347613142565 0.0 31 0.0 0.0 0.0 5.474505799110074 0.0 32 0.0 0.0 0.0 5.603787397226014 0.0 33 0.0 0.0 0.0 5.743619936850661 0.0 34 0.0 0.0 0.0 5.898888113126934 0.0 35 0.0 0.0 0.0 6.076039723643488 0.0 36 0.0 0.0 0.0 6.214569677896689 0.0 37 0.0 0.0 0.0 6.36918656148724 0.0 38 0.0 0.0 0.0 6.533963610975063 0.0 39 0.0 0.0 0.0 6.787642112064025 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 100 0.0 45.000004 4 TACGCTA 25 3.8914193E-5 45.000004 35 GCGATCG 25 3.8914193E-5 45.000004 9 ACGTTAT 20 7.034028E-4 45.0 28 AATATCG 20 7.034028E-4 45.0 1 CGTAAAT 65 0.0 44.999996 16 GTACGAG 150 0.0 43.5 1 CGTTTTT 6375 0.0 43.129414 1 CGGTCTA 205 0.0 42.80488 31 CGACGGT 220 0.0 40.909092 28 CGCATCG 105 0.0 40.714287 21 ACGGGTA 190 0.0 40.26316 5 ATAGGGC 710 0.0 39.929577 4 GTTAGCG 85 0.0 39.705883 1 ATTAGCG 120 0.0 39.375004 1 GTATACG 80 0.0 39.375 1 TAGTCGG 40 3.4592267E-7 39.375 2 ACGGTCT 230 0.0 39.130432 30 ATCGTAG 75 0.0 39.0 1 TGATTCG 75 0.0 39.0 15 >>END_MODULE