SRR1546372_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546372_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2319664
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8925	0.38475399885500655	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4454	0.19201056704764138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACCG	20	7.0347753E-4	45.0	8
GCACGAC	40	6.8193913E-9	45.0	28
CCCGTAT	20	7.0347753E-4	45.0	33
ACGTCCA	20	7.0347753E-4	45.0	20
TATCGAT	25	3.8920392E-5	45.0	23
TGTCGAC	20	7.0347753E-4	45.0	31
CGTTTTT	9045	0.0	43.482586	1
CGGTCTA	145	0.0	43.448273	31
ACTACGG	95	0.0	42.63158	2
CACGTTG	95	0.0	42.63158	1
TAATGCG	180	0.0	42.5	1
CACGACC	145	0.0	41.89655	27
CAATCGT	60	3.6379788E-12	41.249996	10
TACTCGC	55	6.184564E-11	40.90909	45
ACGGGAT	1285	0.0	40.62257	5
AGGGCGA	2465	0.0	40.618664	6
ACGCAAA	50	1.0822987E-9	40.5	18
ATCGGCC	50	1.0822987E-9	40.5	28
AGCGTAT	45	1.9297659E-8	40.0	16
TACGTAC	45	1.9297659E-8	40.0	39