SRR1546371_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546371_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1112667
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5540	0.4979027867277452	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4529	0.4070400218573931	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.033188E-4	45.000004	34
CTAGACG	20	7.033188E-4	45.000004	1
ACTATCC	20	7.033188E-4	45.000004	11
GTACCGT	20	7.033188E-4	45.000004	11
ACCGGTA	20	7.033188E-4	45.000004	19
TGCCCAA	20	7.033188E-4	45.000004	37
GATGTAC	20	7.033188E-4	45.000004	9
CAACGGC	20	7.033188E-4	45.000004	24
CCTAGCG	20	7.033188E-4	45.000004	1
GCGAACG	20	7.033188E-4	45.000004	1
CGTGACG	40	6.8139343E-9	45.000004	18
CGTTGGC	20	7.033188E-4	45.000004	13
CACGCTT	80	0.0	45.000004	28
TTCACGG	80	0.0	45.000004	2
CGTCTTA	20	7.033188E-4	45.000004	18
TAAGTTA	20	7.033188E-4	45.000004	15
ATAGACC	40	6.8139343E-9	45.000004	21
ACGGGTG	80	0.0	45.000004	5
GTTACGA	80	0.0	45.000004	37
AGACGAT	20	7.033188E-4	45.000004	15