SRR1546370_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546370_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1343438
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6129	0.4562175552574812	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4098	0.3050382674898283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGC	30	2.165776E-6	45.000004	11
TAGAACG	40	6.8157533E-9	45.000004	1
GCACGAC	20	7.033712E-4	45.000004	40
CGACATA	20	7.033712E-4	45.000004	9
CACGACA	20	7.033712E-4	45.000004	41
CCTCGTA	30	2.165776E-6	45.000004	17
ACGGGAT	240	0.0	45.000004	5
CCGTAGG	55	1.8189894E-12	45.000004	2
CGTAGTC	20	7.033712E-4	45.000004	15
TACGACA	20	7.033712E-4	45.000004	14
CGCTAAA	30	2.165776E-6	45.000004	44
ACTCCGA	20	7.033712E-4	45.000004	28
CAATCGA	20	7.033712E-4	45.000004	40
TCGACCT	20	7.033712E-4	45.000004	43
TATCGCC	20	7.033712E-4	45.000004	40
ATACCTC	20	7.033712E-4	45.000004	16
AATACCG	40	6.8157533E-9	45.000004	1
TAGTCCG	20	7.033712E-4	45.000004	1
TGGTCGA	40	6.8157533E-9	45.000004	13
AATCGAC	20	7.033712E-4	45.000004	41