##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546370_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1343438 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.127376923981604 31.0 31.0 33.0 30.0 34.0 2 31.468858257694066 31.0 31.0 34.0 30.0 34.0 3 31.54407869957527 31.0 31.0 34.0 30.0 34.0 4 35.40662762256241 37.0 35.0 37.0 33.0 37.0 5 35.30334410668747 37.0 35.0 37.0 33.0 37.0 6 35.34843736741107 37.0 35.0 37.0 33.0 37.0 7 35.75423428546758 37.0 35.0 37.0 35.0 37.0 8 35.669667673536104 37.0 35.0 37.0 35.0 37.0 9 37.443606627175946 39.0 37.0 39.0 35.0 39.0 10 36.93016722766514 39.0 37.0 39.0 32.0 39.0 11 36.61454492131382 39.0 35.0 39.0 32.0 39.0 12 35.73008356172745 37.0 35.0 39.0 31.0 39.0 13 35.3172561740847 37.0 35.0 39.0 30.0 39.0 14 36.18625571109348 38.0 35.0 40.0 30.0 41.0 15 36.547599517059965 38.0 35.0 40.0 31.0 41.0 16 36.68004403627112 38.0 35.0 40.0 32.0 41.0 17 36.61733105658765 38.0 35.0 40.0 32.0 41.0 18 36.54210987034757 38.0 35.0 40.0 31.0 41.0 19 36.412390448982386 37.0 35.0 40.0 31.0 41.0 20 36.20927575370058 37.0 35.0 40.0 31.0 41.0 21 36.06020374591161 37.0 34.0 40.0 31.0 41.0 22 35.93376992462622 37.0 34.0 40.0 30.0 41.0 23 35.92341812573412 37.0 34.0 40.0 30.0 41.0 24 35.88726908126761 37.0 34.0 40.0 30.0 41.0 25 35.78895118345618 36.0 34.0 40.0 30.0 41.0 26 35.65928386721233 36.0 34.0 40.0 30.0 41.0 27 35.54437421004914 36.0 34.0 40.0 30.0 41.0 28 35.51430211144839 36.0 34.0 40.0 29.0 41.0 29 35.47321126840241 36.0 34.0 40.0 29.0 41.0 30 35.32127273458098 36.0 34.0 40.0 29.0 41.0 31 35.08219359583397 36.0 34.0 40.0 28.0 41.0 32 34.849836762098434 35.0 34.0 40.0 27.0 41.0 33 34.66665004265176 36.0 33.0 40.0 26.0 41.0 34 34.4483169301449 35.0 34.0 40.0 25.0 41.0 35 34.254826050774206 35.0 33.0 40.0 24.0 41.0 36 34.00770709180476 35.0 33.0 40.0 23.0 41.0 37 33.80905482798611 35.0 33.0 40.0 23.0 41.0 38 33.774838139162355 35.0 33.0 40.0 23.0 41.0 39 33.76749503884809 35.0 33.0 40.0 23.0 41.0 40 33.512721837554096 35.0 32.0 40.0 22.0 41.0 41 33.46089659515363 35.0 32.0 40.0 22.0 41.0 42 33.34282936763736 35.0 32.0 39.0 22.0 41.0 43 33.28369749850756 35.0 32.0 39.0 22.0 41.0 44 33.044785096148836 35.0 32.0 39.0 21.0 41.0 45 33.01981260020931 35.0 32.0 39.0 21.0 41.0 46 32.973854394471495 35.0 32.0 39.0 21.0 41.0 47 32.93177429847898 35.0 32.0 39.0 21.0 41.0 48 32.86198544331781 35.0 32.0 39.0 20.0 41.0 49 32.89143376918027 35.0 32.0 39.0 20.0 40.0 50 32.72482243319007 35.0 32.0 38.0 20.0 40.0 51 32.51492811726332 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 5.0 13 8.0 14 20.0 15 55.0 16 162.0 17 431.0 18 966.0 19 1945.0 20 3277.0 21 5081.0 22 7576.0 23 10977.0 24 15367.0 25 21059.0 26 27072.0 27 31298.0 28 33132.0 29 36554.0 30 42575.0 31 50953.0 32 62387.0 33 81470.0 34 141204.0 35 192189.0 36 96020.0 37 117391.0 38 157728.0 39 206504.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.065445521118207 24.0787442368014 29.918314056919638 14.937496185160759 2 32.01197226816571 25.738887838515804 29.495146035767934 12.753993857550553 3 28.264720813316284 25.39127224330412 32.319839099385305 14.02416784399429 4 26.420646133278947 27.316630912628643 31.222505244008282 15.040217710084129 5 22.42857504402883 32.504514536584495 30.808492837034535 14.258417582352145 6 20.021392874103604 41.31288529876333 28.416867767623067 10.248854059510002 7 86.82663435156665 4.189549499120912 7.252660710803179 1.7311554385092576 8 88.85158823853426 2.8819342612014847 6.536289728294123 1.7301877719701244 9 84.7553813424959 4.234211031696289 8.27682408864421 2.7335835371636055 10 52.99686327169546 21.152371750687415 13.688610862577951 12.162154115039176 11 45.70229515615905 20.26435161131366 19.04070005463594 14.992653177891349 12 40.37238785861349 20.249836613226663 25.471737437827425 13.906038090332414 13 22.272631859453135 38.130378923329545 24.584312785554673 15.012676431662644 14 16.41482524686662 39.70849417688051 28.41530461398293 15.461375962269939 15 15.221617968227786 21.33005021444979 47.6428387465592 15.805493070763221 16 16.53682566668503 15.839659143183384 45.37887122442569 22.244643965705897 17 16.89240590187266 16.529382077922463 29.793931688697207 36.78428033150767 18 22.80410409710013 21.65399519739653 34.06215992103841 21.479740784464934 19 29.84856763021442 24.178860505657873 24.381177248224333 21.591394615903376 20 31.749288020734863 22.205490688814816 24.102265977291097 21.942955313159224 21 23.5579907669725 25.6223956743817 27.527731089934925 23.291882468710874 22 22.73205015787852 22.810654455211182 24.97510119558923 29.48219419132107 23 20.701588015226605 28.07282509501741 24.82176326708043 26.403823622675553 24 21.995953665148672 21.777409899079824 36.87494324263568 19.35169319313582 25 19.84319335912785 23.373985252761944 33.59797772580499 23.18484366230522 26 18.797592445650636 30.857546086979827 26.139055170391188 24.20580629697835 27 18.851632900066846 29.96528310201141 28.833262123000836 22.34982187492091 28 16.182957456912785 26.21847826248774 38.101795542481305 19.496768738118174 29 18.213642907227577 22.55593484775628 36.246629915187754 22.983792329828397 30 20.319508604044252 27.019855028665262 32.22805964994291 20.43257671734758 31 30.06621816563176 24.839776751885832 23.875310955920558 21.21869412656185 32 29.997364969578054 25.896319740844014 24.878557849338787 19.22775744023915 33 27.22686123215213 26.236417311405514 24.215110782931554 22.321610673510797 34 19.58385872664016 27.123172040689635 28.208893897597058 25.08407533507315 35 21.23231589399734 24.623317190670505 30.106264673174348 24.03810224215781 36 30.52146805435011 24.84446621280625 24.525880613768557 20.108185119075088 37 21.5885660521736 30.64130983342737 27.139473500079646 20.630650614319382 38 22.418526199199366 30.56263110020708 22.90280608409171 24.11603661650184 39 21.67989888629025 28.427660971328784 25.89200245936173 24.00043768301924 40 23.15298510240145 24.00192640077175 26.883860661973237 25.961227834853563 41 18.226297008123932 23.95272427905121 27.66744725100823 30.153531461816623 42 23.364904074471617 25.34638740306587 23.703364055505354 27.585344466957164 43 23.470677470787635 24.97912073352101 25.818459802387604 25.731741993303746 44 21.302062320702557 28.16840077472872 27.64362776696803 22.885909137600695 45 19.389655495824893 33.978568419234826 22.69758634190785 23.934189743032427 46 23.71445500276157 29.865464576705435 25.639069313209838 20.781011107323152 47 23.363043177280975 26.57651488196701 26.447889668149926 23.612552272602088 48 23.60004704348098 23.41954001598883 28.959505388413902 24.020907552116284 49 21.56779843952605 23.054655294847993 31.226375910164816 24.151170355461137 50 20.115926451388155 29.79899332905575 27.49349058162714 22.591589637928955 51 19.404468237462392 30.98297055762901 25.15419394121649 24.45836726369211 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 496.0 1 899.5 2 1303.0 3 6520.5 4 11738.0 5 8841.5 6 5945.0 7 6263.0 8 6581.0 9 6861.5 10 7142.0 11 7214.0 12 7286.0 13 6892.0 14 6498.0 15 6045.5 16 5593.0 17 5345.0 18 5097.0 19 4818.5 20 4540.0 21 4392.5 22 4245.0 23 4230.0 24 4215.0 25 4750.0 26 5287.0 27 5289.0 28 6974.5 29 8660.0 30 10011.0 31 11362.0 32 14662.0 33 17962.0 34 21697.0 35 25432.0 36 28133.5 37 30835.0 38 39120.0 39 47405.0 40 63156.5 41 78908.0 42 93570.0 43 108232.0 44 112892.0 45 117552.0 46 117419.5 47 117287.0 48 115266.5 49 113246.0 50 108825.5 51 104405.0 52 95047.5 53 85690.0 54 79808.5 55 73927.0 56 70596.5 57 67266.0 58 63686.0 59 60106.0 60 55081.5 61 50057.0 62 47450.5 63 44844.0 64 38284.0 65 31724.0 66 28804.0 67 25884.0 68 20902.5 69 15921.0 70 13289.0 71 10657.0 72 8802.5 73 6948.0 74 5495.5 75 2948.0 76 1853.0 77 1390.5 78 928.0 79 714.0 80 500.0 81 416.5 82 333.0 83 225.0 84 117.0 85 80.0 86 43.0 87 37.0 88 31.0 89 22.5 90 14.0 91 8.5 92 3.0 93 3.0 94 3.0 95 5.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1343438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.143640157350724 #Duplication Level Percentage of deduplicated Percentage of total 1 82.14439011275735 15.725426452636654 2 6.677981015108421 2.5568173106171064 3 2.1331385262226004 1.2250810905536074 4 1.0900570547938906 0.8347064003182313 5 0.6796253974558613 0.6505252025345737 6 0.48541323542735876 0.5575545783982035 7 0.40893784505272623 0.5479991266688288 8 0.31512581883119994 0.4826124223995991 9 0.26140283583342233 0.45037816427754573 >10 3.0418202346148515 13.55486058066801 >50 1.240488673520571 17.345219966715224 >100 1.5145909859458289 44.383996714384175 >500 0.004685509623962347 0.574140093339438 >1k 0.0019522956766509782 0.6525508416681804 >5k 3.9045913533019563E-4 0.45813105482065036 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6129 0.4562175552574812 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4098 0.3050382674898283 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030220970376005442 0.0 2 0.0 0.0 0.0 0.12289365046991375 0.0 3 0.0 0.0 0.0 0.19308669250088206 0.0 4 0.0 0.0 0.0 0.32133972687984114 0.0 5 0.0 0.0 0.0 0.5631819257755103 0.0 6 0.0 0.0 0.0 0.8339796849575493 0.0 7 0.0 0.0 0.0 1.0015348680028404 0.0 8 0.0 0.0 0.0 1.4896854190517166 0.0 9 0.0 0.0 0.0 1.725051695723956 0.0 10 7.443588762562917E-5 0.0 0.0 2.0996875181437478 0.0 11 7.443588762562917E-5 0.0 0.0 2.365349201079618 0.0 12 7.443588762562917E-5 0.0 0.0 2.6253537565559406 0.0 13 7.443588762562917E-5 0.0 0.0 2.722864769345515 0.0 14 7.443588762562917E-5 0.0 0.0 2.755542124013166 0.0 15 7.443588762562917E-5 0.0 0.0 2.8100291937551267 0.0 16 7.443588762562917E-5 0.0 0.0 2.946916791098659 0.0 17 7.443588762562917E-5 0.0 0.0 3.1075494365947667 0.0 18 7.443588762562917E-5 0.0 0.0 3.388693784156768 0.0 19 7.443588762562917E-5 0.0 0.0 3.4777191057570205 0.0 20 7.443588762562917E-5 0.0 0.0 3.596444346519899 0.0 21 7.443588762562917E-5 0.0 0.0 3.711075613463368 0.0 22 7.443588762562917E-5 0.0 0.0 3.824888085642955 0.0 23 7.443588762562917E-5 0.0 0.0 3.9604358370092254 0.0 24 7.443588762562917E-5 0.0 0.0 4.055416029619528 0.0 25 7.443588762562917E-5 0.0 0.0 4.1294053019194035 0.0 26 7.443588762562917E-5 0.0 0.0 4.1993750362874955 0.0 27 7.443588762562917E-5 0.0 0.0 4.272247770272986 0.0 28 7.443588762562917E-5 0.0 0.0 4.352638528908666 0.0 29 7.443588762562917E-5 0.0 0.0 4.4440457989129385 0.0 30 7.443588762562917E-5 0.0 0.0 4.569693577225 0.0 31 7.443588762562917E-5 0.0 0.0 4.674127127563758 0.0 32 7.443588762562917E-5 0.0 0.0 4.769181756061687 0.0 33 7.443588762562917E-5 0.0 0.0 4.871828845097429 0.0 34 7.443588762562917E-5 0.0 0.0 4.977527805525822 0.0 35 7.443588762562917E-5 0.0 0.0 5.116797351273375 0.0 36 7.443588762562917E-5 0.0 0.0 5.219146696758615 0.0 37 7.443588762562917E-5 0.0 0.0 5.319486273277963 0.0 38 7.443588762562917E-5 0.0 0.0 5.426599515571243 0.0 39 7.443588762562917E-5 0.0 0.0 5.539369885324072 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGC 30 2.165776E-6 45.000004 11 TAGAACG 40 6.8157533E-9 45.000004 1 GCACGAC 20 7.033712E-4 45.000004 40 CGACATA 20 7.033712E-4 45.000004 9 CACGACA 20 7.033712E-4 45.000004 41 CCTCGTA 30 2.165776E-6 45.000004 17 ACGGGAT 240 0.0 45.000004 5 CCGTAGG 55 1.8189894E-12 45.000004 2 CGTAGTC 20 7.033712E-4 45.000004 15 TACGACA 20 7.033712E-4 45.000004 14 CGCTAAA 30 2.165776E-6 45.000004 44 ACTCCGA 20 7.033712E-4 45.000004 28 CAATCGA 20 7.033712E-4 45.000004 40 TCGACCT 20 7.033712E-4 45.000004 43 TATCGCC 20 7.033712E-4 45.000004 40 ATACCTC 20 7.033712E-4 45.000004 16 AATACCG 40 6.8157533E-9 45.000004 1 TAGTCCG 20 7.033712E-4 45.000004 1 TGGTCGA 40 6.8157533E-9 45.000004 13 AATCGAC 20 7.033712E-4 45.000004 41 >>END_MODULE