##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546369_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2979358 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.124711766763173 31.0 31.0 33.0 30.0 34.0 2 31.457698604867222 31.0 31.0 34.0 30.0 34.0 3 31.539323572393783 31.0 31.0 34.0 30.0 34.0 4 35.38627080062215 37.0 35.0 37.0 33.0 37.0 5 35.29997402124887 37.0 35.0 37.0 33.0 37.0 6 35.35085948046525 37.0 35.0 37.0 33.0 37.0 7 35.813059055004466 37.0 35.0 37.0 35.0 37.0 8 35.73574374076563 37.0 35.0 37.0 35.0 37.0 9 37.52619993971856 39.0 37.0 39.0 35.0 39.0 10 36.90880484990391 39.0 37.0 39.0 32.0 39.0 11 36.58711574775506 39.0 35.0 39.0 32.0 39.0 12 36.156892525168175 38.0 35.0 39.0 32.0 39.0 13 35.95207188931307 38.0 35.0 39.0 31.0 39.0 14 36.93116604315426 39.0 35.0 41.0 31.0 41.0 15 37.153411238260055 39.0 35.0 41.0 32.0 41.0 16 37.194995700415994 39.0 35.0 41.0 32.0 41.0 17 37.124480508888155 39.0 35.0 41.0 32.0 41.0 18 37.02870114971078 38.0 35.0 40.0 32.0 41.0 19 36.95839674184841 38.0 35.0 40.0 31.0 41.0 20 36.83169998368776 38.0 35.0 40.0 31.0 41.0 21 36.69365950651113 38.0 35.0 40.0 31.0 41.0 22 36.591810718953546 38.0 35.0 40.0 31.0 41.0 23 36.52486810916983 38.0 35.0 40.0 31.0 41.0 24 36.53029511727023 38.0 35.0 40.0 31.0 41.0 25 36.47058594502574 38.0 35.0 40.0 31.0 41.0 26 36.367104255346284 38.0 35.0 40.0 30.0 41.0 27 36.28073162070486 38.0 35.0 40.0 30.0 41.0 28 36.24274424221594 38.0 35.0 40.0 30.0 41.0 29 36.183907741197935 38.0 35.0 40.0 30.0 41.0 30 36.0278902367557 38.0 35.0 40.0 30.0 41.0 31 35.830270816733 38.0 34.0 40.0 29.0 41.0 32 35.66578571625162 38.0 34.0 40.0 29.0 41.0 33 35.459766164388434 38.0 34.0 40.0 27.0 41.0 34 35.259908007027015 38.0 34.0 40.0 26.0 41.0 35 35.08551875941058 38.0 34.0 40.0 25.0 41.0 36 34.90775697314656 38.0 34.0 40.0 25.0 41.0 37 34.733516415281414 38.0 33.0 40.0 24.0 41.0 38 34.65780547352819 37.0 33.0 40.0 24.0 41.0 39 34.619538168961235 37.0 33.0 40.0 24.0 41.0 40 34.42910318263196 37.0 33.0 40.0 23.0 41.0 41 34.32730306327739 37.0 33.0 40.0 23.0 41.0 42 34.2109800165002 37.0 33.0 40.0 23.0 41.0 43 34.167883147980206 37.0 33.0 40.0 23.0 41.0 44 34.00936812561633 37.0 33.0 40.0 23.0 41.0 45 33.975571918513985 37.0 33.0 40.0 23.0 41.0 46 33.886599730545974 36.0 33.0 40.0 23.0 41.0 47 33.8329207164765 36.0 33.0 40.0 23.0 41.0 48 33.762127948370086 36.0 33.0 40.0 22.0 41.0 49 33.756779480680066 36.0 33.0 40.0 22.0 41.0 50 33.60952158149507 36.0 32.0 40.0 22.0 41.0 51 33.42462033767006 36.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 2.0 12 8.0 13 6.0 14 31.0 15 85.0 16 268.0 17 718.0 18 1629.0 19 3208.0 20 5760.0 21 9068.0 22 13894.0 23 20322.0 24 29252.0 25 41337.0 26 52840.0 27 60184.0 28 64555.0 29 72315.0 30 84133.0 31 101679.0 32 123301.0 33 157646.0 34 244515.0 35 322619.0 36 227762.0 37 294187.0 38 425877.0 39 622068.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.88068838991487 23.192748236365016 29.26127038106867 13.665292992651437 2 31.056791429563013 25.32189820760043 30.854398833574216 12.766911529262345 3 28.687992513823446 24.965009240245717 33.328757403440605 13.018240842490227 4 24.92647744916858 28.288241963537107 32.31659303782896 14.468687549465354 5 22.166654695407534 32.41987032105575 31.41146515457357 14.002009828963152 6 19.94718325223085 41.72130371710953 27.96686400224478 10.364649028414846 7 88.72931685282533 3.4326522693815247 6.566918107860821 1.2711127699323141 8 90.64201079561435 2.39370360997235 5.681190377255771 1.2830952171575218 9 86.24650008491763 4.60431408377241 7.144693588350242 2.004492242959725 10 41.9834742921126 34.820723122229694 12.922213443298858 10.273589142358858 11 32.713020724599055 23.28508356498279 28.111693861563463 15.890201848854685 12 31.584186928861858 22.67595904889577 29.672499914411095 16.06735410783128 13 22.530927803909435 32.20700567034911 29.188368769379174 16.073697756362275 14 17.991963369289625 35.25078221549743 29.73090175802975 17.026352657183192 15 16.85406721850815 25.087183211953718 40.588173693795774 17.47057587574236 16 19.33711893636146 22.503069453217776 38.6824275565407 19.477384053880066 17 19.795304894544394 21.774489671936035 30.588804702221083 27.84140073129849 18 22.332965692608944 24.131574654673926 32.851574063942635 20.683885588774494 19 25.625755615807165 25.51858487633913 28.08511095343359 20.770548554420113 20 27.249058354182342 24.741404020597727 27.431715154741394 20.57782247047854 21 23.36946415972837 26.104449347812515 29.675923470761152 20.850163021697963 22 23.06298873784218 24.27637094971467 28.348926178055812 24.31171413438734 23 19.81440296869326 28.52691754398095 28.566456263396343 23.09222322392945 24 19.95127809413974 25.002500538706663 35.88484499009518 19.161376377058414 25 19.762009130826172 26.812252841048306 32.14460967765539 21.281128350470134 26 19.206889537947436 30.4459886995789 28.938818362882206 21.408303399591453 27 19.068571148549452 29.668908536671324 29.767285435318612 21.495234879460607 28 17.76661280718866 27.29373240812282 34.86120164142745 20.078453143261065 29 18.628140693397704 24.908755510415332 34.70734299134243 21.755760804844535 30 20.403959510740233 27.52807819671218 31.616475764241827 20.45148652830576 31 25.446421678764352 26.956747057587577 27.138933958255436 20.45789730539264 32 25.706981168426218 27.144505628393766 27.363512541963736 19.785000661216277 33 24.978938415591546 27.272117013128334 27.359082057275426 20.389862514004694 34 20.556676975375233 27.229523944420244 29.61060738588649 22.603191694318035 35 20.883391656860304 27.05455336350986 30.333246289972536 21.728808689657303 36 26.119351887218656 26.36816387960091 27.642163177436213 19.870321055744224 37 21.376585156936496 30.365266611128977 27.70224323495196 20.555904996982573 38 20.780718530636467 31.067733384172026 26.576295967117748 21.57525211807376 39 21.48825350964872 30.21953051630586 26.8259135021706 21.466302471874812 40 23.510031355748453 27.315112853171726 26.99031133552933 22.184544455550494 41 19.977961695103442 25.92105413313875 28.481941411538997 25.619042760218814 42 22.69146574530486 26.59445424148424 26.05051155316011 24.66356846005079 43 22.366798484774236 26.796477630415684 27.33441231298823 23.50231157182185 44 21.141500954232423 28.744044857986182 27.841971324023497 22.272482863757897 45 20.07281434456685 31.43093243577979 25.420879263250672 23.07537395640269 46 21.90136264255588 30.192779786786282 27.194449273971106 20.711408296686738 47 21.396857980813316 27.77793068171062 28.674566802646744 22.15064453482932 48 22.192834832202106 26.18735311432866 29.523440956071745 22.096371097397494 49 21.127202571829233 25.272122383412803 30.56010724458088 23.040567800177087 50 19.972188639297457 29.202902101727958 29.031355077167632 21.793554181806954 51 20.195693166111624 30.445820878189195 26.593245927478335 22.765240028220845 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 815.0 1 1658.5 2 2502.0 3 12892.5 4 23283.0 5 17994.5 6 12706.0 7 12835.5 8 12965.0 9 13268.5 10 13572.0 11 13528.0 12 13484.0 13 13343.0 14 13202.0 15 12786.5 16 12371.0 17 11779.0 18 11187.0 19 10945.5 20 10704.0 21 10653.5 22 10603.0 23 12328.0 24 14053.0 25 16122.5 26 21985.0 27 25778.0 28 30674.5 29 35571.0 30 45780.0 31 55989.0 32 65208.5 33 74428.0 34 87453.0 35 100478.0 36 104391.0 37 108304.0 38 126385.0 39 144466.0 40 172583.5 41 200701.0 42 225902.0 43 251103.0 44 253887.5 45 256672.0 46 250892.5 47 245113.0 48 246776.5 49 248440.0 50 238309.0 51 228178.0 52 210548.0 53 192918.0 54 170885.5 55 148853.0 56 138377.0 57 127901.0 58 117241.0 59 106581.0 60 97561.5 61 88542.0 62 73741.5 63 58941.0 64 49185.5 65 39430.0 66 33751.5 67 28073.0 68 22394.0 69 16715.0 70 14259.5 71 11804.0 72 8996.5 73 6189.0 74 5196.0 75 3260.5 76 2318.0 77 1699.0 78 1080.0 79 814.0 80 548.0 81 375.0 82 202.0 83 139.5 84 77.0 85 59.0 86 41.0 87 38.0 88 35.0 89 25.0 90 15.0 91 13.5 92 12.0 93 12.5 94 13.0 95 8.5 96 4.0 97 3.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2979358.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.051366310736164 #Duplication Level Percentage of deduplicated Percentage of total 1 80.63612433361399 15.362283425577461 2 7.415209551848278 2.8253974688626258 3 2.4841709682799973 1.4198055328559511 4 1.192758067966585 0.908946834916694 5 0.783784550115341 0.7466083286471453 6 0.5559970754352943 0.635550237108948 7 0.424941794660783 0.5667005253576943 8 0.3297927650338572 0.5026402218632443 9 0.2898288609159682 0.49694722170601624 >10 3.342386184127552 14.868861580872661 >50 1.1550603359294862 16.032818197992892 >100 1.3814226076589033 43.81300259154276 >500 0.007457541362180945 0.9930798746530238 >1k 7.102420344934233E-4 0.21172759258280058 >5k 1.7756050862335584E-4 0.2037442546934347 >10k+ 1.7756050862335584E-4 0.41188611076660486 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12176 0.4086786482188445 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6023 0.202157646043208 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05239383786708412 0.0 2 0.0 0.0 0.0 0.1628874408513512 0.0 3 0.0 0.0 0.0 0.23008312529075056 0.0 4 0.0 0.0 0.0 0.3296012093880628 0.0 5 0.0 0.0 0.0 0.5300806415341829 0.0 6 0.0 0.0 0.0 0.7421061852922677 0.0 7 0.0 0.0 0.0 0.8828412027020587 0.0 8 0.0 0.0 0.0 1.2924260864253305 0.0 9 0.0 0.0 0.0 1.4896162193331584 0.0 10 0.0 0.0 0.0 1.819519507222697 0.0 11 0.0 0.0 0.0 2.102466370271716 0.0 12 0.0 0.0 0.0 2.3723231649234497 0.0 13 0.0 0.0 0.0 2.477580740548803 0.0 14 0.0 0.0 0.0 2.5193347023083494 0.0 15 0.0 0.0 0.0 2.580858023775592 0.0 16 0.0 0.0 0.0 2.724647390478083 0.0 17 0.0 0.0 0.0 2.9094858691033436 0.0 18 0.0 0.0 0.0 3.1823970130477774 0.0 19 0.0 0.0 0.0 3.2970861507747644 0.0 20 0.0 0.0 0.0 3.4344647403903794 0.0 21 0.0 0.0 0.0 3.584698448457688 0.0 22 0.0 0.0 0.0 3.75543993034741 0.0 23 0.0 0.0 0.0 3.939539994857953 0.0 24 0.0 0.0 0.0 4.076280863192674 0.0 25 0.0 0.0 0.0 4.19342019320941 0.0 26 0.0 0.0 0.0 4.310693780337911 0.0 27 0.0 0.0 0.0 4.436358436951854 0.0 28 0.0 0.0 0.0 4.5678297136497195 0.0 29 0.0 0.0 0.0 4.705409688932985 0.0 30 0.0 0.0 0.0 4.885045704477274 0.0 31 0.0 0.0 0.0 5.04115316118439 0.0 32 0.0 0.0 0.0 5.193736368707621 0.0 33 0.0 0.0 0.0 5.347360068847047 0.0 34 0.0 0.0 0.0 5.508200088743951 0.0 35 0.0 0.0 0.0 5.69569014532661 0.0 36 0.0 0.0 0.0 5.862873813754507 0.0 37 0.0 0.0 0.0 6.035327073819259 0.0 38 0.0 0.0 0.0 6.212747847019392 0.0 39 0.0 0.0 0.0 6.416013114234677 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAC 60 0.0 44.999996 33 CGTTTTT 12240 0.0 43.584557 1 CTACGCG 90 0.0 42.5 1 ACTACGG 165 0.0 42.272728 2 GGTACGC 110 0.0 40.909092 9 TACGCGG 215 0.0 40.813953 2 CGACGGT 355 0.0 40.563377 28 CGTAAGG 495 0.0 40.454544 2 ACACGTA 45 1.9301297E-8 40.0 32 AGGGCGA 2665 0.0 39.42777 6 TATCTCG 40 3.4607E-7 39.375 30 TCGACAA 320 0.0 39.375 19 CGACAGG 305 0.0 39.09836 2 CGAACGG 150 0.0 39.0 2 CGTTTAG 75 0.0 39.0 30 TTGTACG 110 0.0 38.863636 1 CTAAGCG 145 0.0 38.793102 1 CGCATCC 35 6.251639E-6 38.571426 19 ATAGGGC 1295 0.0 38.397686 4 TAAGGGA 4560 0.0 38.289474 4 >>END_MODULE