##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546367_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2739111 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.166983010181042 31.0 31.0 33.0 30.0 34.0 2 31.49716605132103 31.0 31.0 34.0 30.0 34.0 3 31.589256879330556 31.0 31.0 34.0 30.0 34.0 4 35.436831147040046 37.0 35.0 37.0 33.0 37.0 5 35.35064405933166 37.0 35.0 37.0 33.0 37.0 6 35.39886956023323 37.0 35.0 37.0 33.0 37.0 7 35.820464011863706 37.0 35.0 37.0 35.0 37.0 8 35.73101674229339 37.0 35.0 37.0 35.0 37.0 9 37.52025565959174 39.0 37.0 39.0 35.0 39.0 10 36.941577760083476 39.0 37.0 39.0 32.0 39.0 11 36.67193443420146 39.0 35.0 39.0 32.0 39.0 12 36.08463841005348 37.0 35.0 39.0 32.0 39.0 13 35.8409067759576 38.0 35.0 39.0 31.0 39.0 14 36.76106225706078 39.0 35.0 41.0 31.0 41.0 15 37.00261252647301 39.0 35.0 41.0 32.0 41.0 16 37.06749343126292 39.0 35.0 41.0 32.0 41.0 17 37.013620477592916 38.0 35.0 41.0 32.0 41.0 18 36.93455723408069 38.0 35.0 40.0 32.0 41.0 19 36.851533581516044 38.0 35.0 40.0 31.0 41.0 20 36.72442810824388 38.0 35.0 40.0 31.0 41.0 21 36.59255393446998 38.0 35.0 40.0 31.0 41.0 22 36.495501277604305 38.0 35.0 40.0 31.0 41.0 23 36.41855222369593 38.0 35.0 40.0 31.0 41.0 24 36.41903011597559 38.0 35.0 40.0 31.0 41.0 25 36.361065688831154 38.0 35.0 40.0 31.0 41.0 26 36.27868640591783 38.0 35.0 40.0 30.0 41.0 27 36.16826773358218 38.0 35.0 40.0 30.0 41.0 28 36.11393222107465 38.0 35.0 40.0 30.0 41.0 29 36.040553668690315 38.0 35.0 40.0 30.0 41.0 30 35.913130939198886 38.0 35.0 40.0 30.0 41.0 31 35.73648347949389 38.0 34.0 40.0 29.0 41.0 32 35.57051503206697 38.0 34.0 40.0 29.0 41.0 33 35.39407019284724 38.0 34.0 40.0 27.0 41.0 34 35.19902041209721 38.0 34.0 40.0 27.0 41.0 35 35.015543364252125 37.0 34.0 40.0 26.0 41.0 36 34.82996198401598 37.0 34.0 40.0 25.0 41.0 37 34.64630568093079 37.0 33.0 40.0 24.0 41.0 38 34.56428344816986 37.0 33.0 40.0 24.0 41.0 39 34.51455928584128 37.0 33.0 40.0 24.0 41.0 40 34.30952414852848 37.0 33.0 40.0 23.0 41.0 41 34.19758673525826 36.0 33.0 40.0 23.0 41.0 42 34.08194666079615 36.0 33.0 40.0 23.0 41.0 43 34.057787727478 36.0 33.0 40.0 23.0 41.0 44 33.88286783558607 36.0 33.0 40.0 23.0 41.0 45 33.8509786569438 36.0 33.0 40.0 23.0 41.0 46 33.765794449366965 35.0 33.0 40.0 23.0 41.0 47 33.69475716756276 35.0 33.0 40.0 23.0 41.0 48 33.61338660609227 35.0 33.0 40.0 23.0 41.0 49 33.59770232020535 35.0 32.0 39.0 23.0 41.0 50 33.454636194006014 35.0 32.0 39.0 22.0 41.0 51 33.24613898450994 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 1.0 11 3.0 12 5.0 13 14.0 14 32.0 15 113.0 16 281.0 17 713.0 18 1545.0 19 3005.0 20 5291.0 21 8425.0 22 12533.0 23 18265.0 24 25835.0 25 35909.0 26 47005.0 27 54473.0 28 58788.0 29 66569.0 30 78971.0 31 95453.0 32 118507.0 33 150697.0 34 245113.0 35 321317.0 36 212392.0 37 272231.0 38 382022.0 39 523538.0 40 62.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.049583605775744 23.46907445517907 28.713184679262728 12.76815725978246 2 31.67969461624593 25.33559246047349 30.23791295789035 12.746799965390231 3 29.863375379822138 24.86627960677753 31.78315884241274 13.487186170987595 4 25.854483443715864 27.80902270846271 31.28160925205295 15.054884595768481 5 22.665163989338147 32.89669531464771 29.698796434317558 14.739344261696589 6 19.84746145738526 42.06916039547138 27.749258792360003 10.334119354783358 7 88.57932372948741 3.7542472721988998 6.219864766342073 1.446564231971614 8 89.69001256247009 2.926825528428749 5.698308684825113 1.6848532242760517 9 85.71018115001546 4.502227182469057 7.31492809163265 2.472663575882832 10 44.70833785122253 28.57631545417473 14.056823546033732 12.658523148569007 11 37.54280129574888 24.011732273719467 22.886148096955544 15.559318333576114 12 34.63079809471029 22.456994258356087 26.866928722494272 16.04527892443935 13 24.60236186120241 31.973403049383542 26.682963925156738 16.741271164257306 14 19.589458039487994 35.52137901676858 27.986525555189257 16.90263738855417 15 18.04581851556947 24.692573612387378 39.83347151685346 17.428136355189693 16 20.031681812091588 20.564664958813278 38.85611061399118 20.54754261510395 17 20.95376930690286 19.569926154872878 28.93044495093481 30.545859587289453 18 23.26572380600859 23.238123610178633 32.38287897058571 21.113273613227065 19 27.304004839526403 25.32602731324141 25.65091374537213 21.719054101860056 20 28.57945515899137 24.74299143043126 24.957075489091167 21.720477921486207 21 24.67899256364565 26.425070031846097 28.156580730025183 20.739356674483073 22 24.793153691106347 23.667679038929055 26.58902833802646 24.950138931938138 23 21.364632539535638 28.524181750940357 25.57150842006768 24.539677289456325 24 21.77834341142071 25.87631534465014 33.17390204340021 19.17143920052893 25 21.106264039682948 25.33018924753323 31.107465159316288 22.45608155346753 26 19.930152520288516 29.46565509758458 27.032237831909693 23.571954550217207 27 20.397712980598453 29.36693693683827 28.930079868979387 21.305270213583896 28 18.49362804209103 27.503704669142653 33.491669377400186 20.510997911366132 29 19.223645920154386 25.73641593933214 32.891365118098534 22.148573022414936 30 21.9478509633235 27.219597891432656 30.48222580245927 20.350325342784576 31 27.018291701212547 25.86101841071793 25.605461041921995 21.515228846147526 32 26.701656121274386 26.531345389069667 25.958531801011347 20.8084666886446 33 25.67274564630641 27.217297875113495 26.338764657584157 20.771191820995934 34 21.204726643060468 26.630355615380317 28.558572471141186 23.606345270418032 35 21.98056230652938 25.953311129048807 29.052309307654927 23.013817256766885 36 28.316194560936015 25.28955562589468 25.870254984190126 20.523994828979184 37 22.551404452028414 29.10670651901292 27.30363975757098 21.038249271387688 38 22.168433480789933 29.84030220023942 24.795453707425512 23.195810611545134 39 22.253935674749947 28.0231797835137 26.630574664553574 23.092309877182778 40 23.932472981197183 25.66150112207939 26.08558032149847 24.320445575224955 41 20.848443162763395 24.33577901735271 27.505238013355427 27.310539806528467 42 22.772753641601234 26.327118543206176 25.236691758749462 25.66343605644313 43 23.308474902988596 26.064405568083952 26.086675567364743 24.540443961562712 44 21.737198675044567 27.638931025431248 27.3562480673474 23.26762223217679 45 20.502381977218157 30.66363502610884 25.25863318427037 23.57534981240264 46 23.352394262225957 28.02569884900612 27.325763724069596 21.29614316469833 47 22.848617671938083 27.43488672054546 27.27388557820402 22.44261002931243 48 23.28770173972504 26.02523227426709 28.23627812089397 22.4507878651139 49 22.394857309543134 25.41912321187422 29.095863584936865 23.090155893645786 50 21.476639683459343 28.248398841814005 27.873313640812658 22.401647833913994 51 21.611720006965765 29.688793188738977 25.657485220569743 23.042001583725522 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 820.0 1 1669.5 2 2519.0 3 10915.0 4 19311.0 5 14513.5 6 9716.0 7 10144.5 8 10573.0 9 10866.0 10 11159.0 11 11101.0 12 11043.0 13 10822.0 14 10601.0 15 10218.5 16 9836.0 17 9481.0 18 9126.0 19 8919.5 20 8713.0 21 9050.0 22 9387.0 23 10493.0 24 11599.0 25 12504.0 26 15677.0 27 17945.0 28 20757.0 29 23569.0 30 31050.0 31 38531.0 32 44818.0 33 51105.0 34 60511.5 35 69918.0 36 78662.5 37 87407.0 38 96251.0 39 105095.0 40 133167.0 41 161239.0 42 182972.5 43 204706.0 44 217311.0 45 229916.0 46 227556.5 47 225197.0 48 221686.0 49 218175.0 50 216026.5 51 213878.0 52 199376.5 53 184875.0 54 169598.0 55 154321.0 56 145632.0 57 136943.0 58 127882.5 59 118822.0 60 110225.0 61 101628.0 62 91110.0 63 80592.0 64 69809.5 65 59027.0 66 52459.5 67 45892.0 68 37414.5 69 28937.0 70 23749.0 71 18561.0 72 14362.5 73 10164.0 74 8803.0 75 5583.0 76 3724.0 77 3056.0 78 2388.0 79 1587.0 80 786.0 81 522.0 82 258.0 83 190.0 84 122.0 85 91.5 86 61.0 87 46.5 88 32.0 89 29.5 90 27.0 91 16.5 92 6.0 93 8.0 94 10.0 95 5.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2739111.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.354387838297257 #Duplication Level Percentage of deduplicated Percentage of total 1 80.37101774363067 14.751608306252677 2 7.205127802544148 2.644914202247875 3 2.318749080905438 1.2767765979190113 4 1.2308994820422081 0.9036962593344757 5 0.7805029126137446 0.7162826583516649 6 0.5783228575721366 0.6368857214178805 7 0.4705886157065987 0.6046156175476436 8 0.3617200325637553 0.5311319813245342 9 0.3099015590324069 0.5119248065556392 >10 3.7965650919503604 16.130640944320042 >50 1.1689696715131095 15.525375271827649 >100 1.3956246133092798 43.178515189868335 >500 0.009007902462127394 1.08150830755953 >1k 0.0026022829335034694 0.8820781168599402 >5k 2.0017561026949764E-4 0.24072708354158312 >10k+ 2.0017561026949764E-4 0.38331893507163256 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10433 0.38089000409256873 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6552 0.23920169719299436 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2789 0.10182135736740863 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2780 0.10149278360752814 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.047314621422790096 0.0 2 0.0 0.0 0.0 0.1645789455045816 0.0 3 0.0 0.0 0.0 0.23109687778260904 0.0 4 0.0 0.0 0.0 0.3252515140861396 0.0 5 0.0 0.0 0.0 0.5251338846801024 0.0 6 0.0 0.0 0.0 0.7247972061008116 0.0 7 0.0 0.0 0.0 0.8473917267317754 0.0 8 0.0 0.0 0.0 1.203967272593188 0.0 9 0.0 0.0 0.0 1.3725986278029623 0.0 10 0.0 0.0 0.0 1.6706515362101062 0.0 11 0.0 0.0 0.0 1.9035008073787445 0.0 12 0.0 0.0 0.0 2.1309468656071258 0.0 13 0.0 0.0 0.0 2.216996682500271 0.0 14 0.0 0.0 0.0 2.2538699599979704 0.0 15 0.0 0.0 0.0 2.310275122110787 0.0 16 0.0 0.0 0.0 2.437287134402366 0.0 17 0.0 0.0 0.0 2.5913882277863145 0.0 18 0.0 0.0 0.0 2.8288375315932797 0.0 19 0.0 0.0 0.0 2.9271175939930876 0.0 20 0.0 0.0 0.0 3.049018458908748 0.0 21 0.0 0.0 0.0 3.175555864658278 0.0 22 0.0 0.0 0.0 3.3102711062092776 0.0 23 0.0 0.0 0.0 3.463897593051176 0.0 24 0.0 0.0 0.0 3.5812714417195943 0.0 25 0.0 0.0 0.0 3.678565782839761 0.0 26 0.0 0.0 0.0 3.778488714038971 0.0 27 0.0 0.0 0.0 3.8802735632108374 0.0 28 0.0 0.0 0.0 3.987242576149707 0.0 29 3.650819554227631E-5 0.0 0.0 4.10501801496909 0.0 30 3.650819554227631E-5 0.0 0.0 4.25192699383121 0.0 31 3.650819554227631E-5 0.0 0.0 4.378172334016401 0.0 32 3.650819554227631E-5 0.0 0.0 4.498722395696998 0.0 33 3.650819554227631E-5 0.0 0.0 4.628070932503283 0.0 34 3.650819554227631E-5 0.0 0.0 4.765597305111037 0.0 35 3.650819554227631E-5 0.0 0.0 4.915499956007625 0.0 36 3.650819554227631E-5 0.0 0.0 5.042219902734866 0.0 37 3.650819554227631E-5 0.0 0.0 5.179381193387197 0.0 38 3.650819554227631E-5 0.0 0.0 5.323333008410393 0.0 39 3.650819554227631E-5 0.0 0.0 5.493826281592823 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 475 0.0 45.000004 28 CGACGGA 20 7.034998E-4 45.0 28 CGCGCAT 20 7.034998E-4 45.0 31 CGTACCG 20 7.034998E-4 45.0 38 GCGATAC 180 0.0 43.75 9 CGGTCTA 505 0.0 42.772278 31 CGCATCG 190 0.0 42.63158 21 CGTTTTT 9390 0.0 42.507988 1 CGTAAAT 230 0.0 42.06522 16 ATGCGTA 55 6.184564E-11 40.909092 11 TAAACGG 240 0.0 40.312504 2 AATACGG 235 0.0 40.212765 2 GATCGAC 45 1.9299478E-8 40.0 9 TTGCGAG 260 0.0 39.80769 1 TATTACG 170 0.0 39.705883 1 TCACGAC 540 0.0 39.583332 25 AAATCGT 245 0.0 39.489796 12 TCGTTAG 40 3.4605546E-7 39.375 1 ACTACGA 40 3.4605546E-7 39.375 29 AGGGCGA 2535 0.0 38.964497 6 >>END_MODULE