SRR1546366_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546366_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1778100
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8910	0.5010966762274338	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3750	0.21089927450649568	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	1996	0.11225465384399078	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	1809	0.10173781002193352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATC	70	0.0	45.000004	13
TAATACG	20	7.03433E-4	45.0	1
ACGTTAG	45	3.8562575E-10	45.0	1
ATAGACG	40	6.8193913E-9	45.0	1
TATGCGT	75	0.0	45.0	20
CGGATTA	25	3.8916703E-5	45.0	20
ACGTGTA	45	3.8562575E-10	45.0	21
ACTACCG	25	3.8916703E-5	45.0	23
CGTACGT	20	7.03433E-4	45.0	21
TATCGCC	20	7.03433E-4	45.0	6
TAGTCGA	20	7.03433E-4	45.0	12
ATTTCGC	25	3.8916703E-5	45.0	42
TATATCG	30	2.1661745E-6	44.999996	21
TAGCACG	30	2.1661745E-6	44.999996	1
CATCGAA	30	2.1661745E-6	44.999996	29
TAATGCG	30	2.1661745E-6	44.999996	1
CGTTTTT	7320	0.0	43.186478	1
CGTTGAT	215	0.0	42.906975	25
CTAACGG	105	0.0	42.857143	2
GCGTAAG	100	0.0	42.75	1