##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546366_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1778100 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.216582306956862 31.0 31.0 33.0 30.0 34.0 2 31.55615544682526 31.0 31.0 34.0 30.0 34.0 3 31.632438558011362 31.0 31.0 34.0 30.0 34.0 4 35.48408975873123 37.0 35.0 37.0 33.0 37.0 5 35.39859175524436 37.0 35.0 37.0 33.0 37.0 6 35.44466902873854 37.0 35.0 37.0 33.0 37.0 7 35.84511669759856 37.0 35.0 37.0 35.0 37.0 8 35.75874810190653 37.0 35.0 37.0 35.0 37.0 9 37.522503233788875 39.0 37.0 39.0 35.0 39.0 10 37.03386648669929 39.0 37.0 39.0 33.0 39.0 11 36.75033012766436 39.0 35.0 39.0 32.0 39.0 12 36.04681232776559 37.0 35.0 39.0 32.0 39.0 13 35.72866711658512 37.0 35.0 39.0 31.0 39.0 14 36.658505708340364 38.0 35.0 41.0 31.0 41.0 15 36.948095157752654 38.0 35.0 41.0 32.0 41.0 16 37.02810471851977 38.0 35.0 41.0 32.0 41.0 17 36.949429728361736 38.0 35.0 41.0 32.0 41.0 18 36.8908407851077 38.0 35.0 40.0 32.0 41.0 19 36.773669647376416 38.0 35.0 40.0 31.0 41.0 20 36.631794612226535 38.0 35.0 40.0 31.0 41.0 21 36.47191890219898 38.0 35.0 40.0 31.0 41.0 22 36.37182610651819 38.0 35.0 40.0 31.0 41.0 23 36.318489398796466 38.0 35.0 40.0 31.0 41.0 24 36.29587874697711 38.0 35.0 40.0 31.0 41.0 25 36.24233338957314 38.0 35.0 40.0 31.0 41.0 26 36.1110972386255 38.0 35.0 40.0 31.0 41.0 27 36.029538833586415 37.0 35.0 40.0 30.0 41.0 28 35.99644283223666 37.0 35.0 40.0 30.0 41.0 29 35.94971486418087 37.0 35.0 40.0 30.0 41.0 30 35.81141555593049 37.0 35.0 40.0 30.0 41.0 31 35.60442213598785 37.0 34.0 40.0 29.0 41.0 32 35.411334008211014 37.0 34.0 40.0 29.0 41.0 33 35.22056745964794 37.0 34.0 40.0 27.0 41.0 34 35.015136943928916 37.0 34.0 40.0 27.0 41.0 35 34.818790844159494 37.0 34.0 40.0 26.0 41.0 36 34.62885045835442 36.0 33.0 40.0 24.0 41.0 37 34.4768365108824 36.0 33.0 40.0 24.0 41.0 38 34.388196951802485 36.0 33.0 40.0 24.0 41.0 39 34.36150835161127 36.0 33.0 40.0 24.0 41.0 40 34.09100894212924 36.0 33.0 40.0 23.0 41.0 41 34.01321298014735 36.0 33.0 40.0 23.0 41.0 42 33.89559698554637 36.0 33.0 40.0 23.0 41.0 43 33.863951408807154 35.0 33.0 40.0 23.0 41.0 44 33.671007817333106 35.0 33.0 40.0 23.0 41.0 45 33.615724087509136 35.0 33.0 40.0 23.0 41.0 46 33.51822675889995 35.0 33.0 39.0 23.0 41.0 47 33.44834261290141 35.0 32.0 39.0 23.0 41.0 48 33.35022046004162 35.0 32.0 39.0 22.0 41.0 49 33.35330521343007 35.0 32.0 39.0 22.0 41.0 50 33.202100556774084 35.0 32.0 39.0 22.0 41.0 51 32.99397615432203 35.0 32.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 1.0 12 6.0 13 14.0 14 24.0 15 62.0 16 153.0 17 420.0 18 1009.0 19 1903.0 20 3307.0 21 5200.0 22 7923.0 23 11953.0 24 16712.0 25 23880.0 26 30936.0 27 35730.0 28 39165.0 29 43965.0 30 51645.0 31 62392.0 32 77899.0 33 101614.0 34 173006.0 35 234229.0 36 133952.0 37 168654.0 38 234759.0 39 317507.0 40 76.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.89691243462122 23.58478150835161 29.39694055452449 14.121365502502673 2 31.827624992970023 26.122490298633373 28.862043754569484 13.187840953827118 3 29.39356616613239 24.908216635734775 32.65704965974917 13.041167538383668 4 26.874191552781056 27.35307350542714 31.06180754738204 14.710927394409765 5 22.82914346774647 31.695067768966872 30.331702378943813 15.14408638434284 6 20.07671109611383 42.027669984815255 27.612676452393004 10.282942466677914 7 86.70187278555763 4.255047522636522 7.333164613913729 1.709915077892132 8 88.20105730836286 3.095157752657331 6.706540689500027 1.9972442494797817 9 83.71902592655081 4.625161689443788 8.705078454530115 2.9507339294752826 10 48.74911422304707 24.39958382543164 14.027613745008718 12.823688206512571 11 41.412406501321634 21.37826893875485 21.98892075811259 15.220403801810923 12 38.24756762836736 20.433496428772287 26.133682020133854 15.185253922726504 13 22.88943254035206 34.28721669197458 26.578932568471963 16.244418199201395 14 17.66739778415162 37.68983746695911 28.42539789663124 16.217366852258028 15 16.60873966593555 22.77172262527417 43.760924582419435 16.858613126370845 16 17.76064338338676 18.01181035937236 42.98262189978067 21.24492435746021 17 18.033012766436084 18.30920645632979 29.27411281705191 34.383667960182215 18 22.571396434396267 23.37270119790788 32.18120465665598 21.87469771103987 19 28.01495978853833 24.532141049434788 25.426916371407682 22.0259827906192 20 30.41859288004049 22.626005286541815 24.70125414768573 22.25414768573196 21 23.855801136044093 26.47708227883696 27.801979641190034 21.865136943928913 22 23.682976210561833 23.500534278162082 25.50992632585344 27.306563185422643 23 21.582363196670602 28.487992801304763 24.510657443338395 25.418986558686242 24 21.424048141274394 23.514650469602387 35.06461953770879 19.99668185141443 25 21.44873741634329 23.535627917439964 31.56689724987346 23.44873741634329 26 19.181260896462515 29.529554018334174 27.0768235757269 24.212361509476406 27 19.79174399640065 29.007817333108378 28.98453405320286 22.215904617288114 28 17.964287722850234 26.63815308475339 35.83988527079467 19.557673921601708 29 18.96158821213655 23.786120015747144 34.69506776896687 22.55722400314943 30 20.75085765704966 26.969405545244925 31.631910466227996 20.64782633147742 31 29.372251279455597 24.673078004611664 24.73134244418199 21.223328271750745 32 28.872954277037287 25.8529329059108 25.569990439232885 19.70412237781902 33 26.83398009110849 26.122771497666047 25.245149316686348 21.798099094539115 34 21.363140430796918 26.58506270738429 28.422023508239132 23.629773353579665 35 21.260390304257353 23.91507789213205 30.86406838760475 23.960463416005847 36 29.453742759124907 24.37973117372476 25.687306675665035 20.479219391485294 37 22.39216017096901 29.802148360609635 27.27765592486362 20.528035543557728 38 22.809403295652665 30.37973117372476 24.315392835048648 22.495472695573927 39 22.611832855294978 27.918227321298016 25.6070524717395 23.86288735166751 40 24.044429447162702 24.921545469883583 26.579045048085035 24.454980034868683 41 19.616781958270064 24.313705640852596 27.940273325459756 28.12923907541758 42 22.476238681738934 25.602665766829762 24.96400652381756 26.957089027613744 43 23.4112254653844 25.3344018896575 25.80034868680052 25.454023958157585 44 22.250885776952927 26.945109948821777 27.566166132388503 23.237838141836793 45 20.502671390810416 31.587649738484902 24.18165457510826 23.728024295596423 46 24.040661380124853 28.891682132613468 26.823182048253752 20.24447443900793 47 23.439739047297678 26.285023339519714 27.694899049547267 22.58033856363534 48 23.239637815645914 23.875203869298687 29.05927675608796 23.82588155896744 49 21.18210449356054 23.933805747708227 31.024126877003543 23.859962881727686 50 20.909003993026264 28.524323716326418 27.786738653619032 22.77993363702829 51 20.40852595467072 29.279455598672737 25.64692649457286 24.665091952083685 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 922.0 1 1457.5 2 1993.0 3 9089.0 4 16185.0 5 11980.5 6 7776.0 7 7910.5 8 8045.0 9 8358.5 10 8672.0 11 8574.0 12 8476.0 13 8249.5 14 8023.0 15 7542.5 16 7062.0 17 6600.0 18 6138.0 19 6020.5 20 5903.0 21 5753.5 22 5604.0 23 6724.5 24 7845.0 25 7890.0 26 8416.0 27 8897.0 28 13104.0 29 17311.0 30 18746.5 31 20182.0 32 26558.5 33 32935.0 34 35620.5 35 38306.0 36 40284.5 37 42263.0 38 50201.0 39 58139.0 40 76164.5 41 94190.0 42 113296.0 43 132402.0 44 140450.5 45 148499.0 46 149970.5 47 151442.0 48 148842.0 49 146242.0 50 139822.5 51 133403.0 52 124906.0 53 116409.0 54 108044.0 55 99679.0 56 94753.5 57 89828.0 58 89200.0 59 88572.0 60 81750.0 61 74928.0 62 66536.5 63 58145.0 64 51526.0 65 44907.0 66 37532.0 67 30157.0 68 24822.0 69 19487.0 70 15903.0 71 12319.0 72 9979.0 73 7639.0 74 6426.0 75 4168.0 76 3123.0 77 2249.0 78 1375.0 79 1122.5 80 870.0 81 614.0 82 358.0 83 269.5 84 181.0 85 117.5 86 54.0 87 47.0 88 40.0 89 26.0 90 12.0 91 8.5 92 5.0 93 5.5 94 6.0 95 4.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1778100.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.937530444289568 #Duplication Level Percentage of deduplicated Percentage of total 1 81.02304576941441 15.343763959473522 2 7.0047925207775545 2.6530694323631354 3 2.325951082040519 1.3214330828421177 4 1.2284325033213555 0.9305391172161205 5 0.7323203681557753 0.693416963346167 6 0.5640258730165271 0.6408754284970489 7 0.435112852985197 0.5767974030076201 8 0.34690714521282195 0.5255651699047518 9 0.2916252697861254 0.4970396182409017 >10 3.401216472997823 14.900145973741402 >50 1.210798733404271 16.672732637965577 >100 1.4238364844579878 42.619139682042885 >500 0.00805607399000612 1.0661833856711227 >1k 0.003580477328891608 1.0558430624119244 >5k 2.9837311074096734E-4 0.5034550832757276 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8910 0.5010966762274338 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3750 0.21089927450649568 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1996 0.11225465384399078 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1809 0.10173781002193352 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.057308362859231764 0.0 2 0.0 0.0 0.0 0.23643214667341544 0.0 3 0.0 0.0 0.0 0.3472808053540296 0.0 4 0.0 0.0 0.0 0.5007592373882234 0.0 5 0.0 0.0 0.0 0.8189078229570891 0.0 6 0.0 0.0 0.0 1.121927900568022 0.0 7 0.0 0.0 0.0 1.309881334008211 0.0 8 0.0 0.0 0.0 1.7578313930600078 0.0 9 0.0 0.0 0.0 1.977729036612114 0.0 10 0.0 0.0 0.0 2.361059557955121 0.0 11 0.0 0.0 0.0 2.6751588774534616 0.0 12 0.0 0.0 0.0 2.9800911084865866 0.0 13 0.0 0.0 0.0 3.098757100275575 0.0 14 0.0 0.0 0.0 3.1439176649232325 0.0 15 0.0 0.0 0.0 3.220628761037062 0.0 16 0.0 0.0 0.0 3.3877734660592767 0.0 17 0.0 0.0 0.0 3.583712952027445 0.0 18 0.0 0.0 0.0 3.9091727124458693 0.0 19 0.0 0.0 0.0 4.031550531466172 0.0 20 0.0 0.0 0.0 4.167988302120241 0.0 21 0.0 0.0 0.0 4.321185535121759 0.0 22 0.0 0.0 0.0 4.470502221472358 0.0 23 0.0 0.0 0.0 4.635959732298521 0.0 24 0.0 0.0 0.0 4.761599460097857 0.0 25 0.0 0.0 0.0 4.860806478825713 0.0 26 0.0 0.0 0.0 4.9573139868398854 0.0 27 0.0 0.0 0.0 5.062707384286598 0.0 28 0.0 0.0 0.0 5.168606939992126 0.0 29 0.0 0.0 0.0 5.278836960800855 0.0 30 0.0 0.0 0.0 5.426691412181542 0.0 31 0.0 0.0 0.0 5.55801136044092 0.0 32 0.0 0.0 0.0 5.680614138687363 0.0 33 0.0 0.0 0.0 5.800911084865868 0.0 34 0.0 0.0 0.0 5.928687925313537 0.0 35 0.0 0.0 0.0 6.081210280636634 0.0 36 0.0 0.0 0.0 6.2112367133457065 0.0 37 0.0 0.0 0.0 6.341881783926663 0.0 38 0.0 0.0 0.0 6.473595410831787 0.0 39 0.0 0.0 0.0 6.6058714358022605 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAATC 70 0.0 45.000004 13 TAATACG 20 7.03433E-4 45.0 1 ACGTTAG 45 3.8562575E-10 45.0 1 ATAGACG 40 6.8193913E-9 45.0 1 TATGCGT 75 0.0 45.0 20 CGGATTA 25 3.8916703E-5 45.0 20 ACGTGTA 45 3.8562575E-10 45.0 21 ACTACCG 25 3.8916703E-5 45.0 23 CGTACGT 20 7.03433E-4 45.0 21 TATCGCC 20 7.03433E-4 45.0 6 TAGTCGA 20 7.03433E-4 45.0 12 ATTTCGC 25 3.8916703E-5 45.0 42 TATATCG 30 2.1661745E-6 44.999996 21 TAGCACG 30 2.1661745E-6 44.999996 1 CATCGAA 30 2.1661745E-6 44.999996 29 TAATGCG 30 2.1661745E-6 44.999996 1 CGTTTTT 7320 0.0 43.186478 1 CGTTGAT 215 0.0 42.906975 25 CTAACGG 105 0.0 42.857143 2 GCGTAAG 100 0.0 42.75 1 >>END_MODULE