##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546365_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2469924 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.199550269562952 31.0 31.0 33.0 30.0 34.0 2 31.540818664865803 31.0 31.0 34.0 30.0 34.0 3 31.597704220858617 31.0 31.0 34.0 30.0 34.0 4 35.459298342783015 37.0 35.0 37.0 33.0 37.0 5 35.37687839787783 37.0 35.0 37.0 33.0 37.0 6 35.41838493816004 37.0 35.0 37.0 33.0 37.0 7 35.82338241986393 37.0 35.0 37.0 35.0 37.0 8 35.72729606255091 37.0 35.0 37.0 35.0 37.0 9 37.472647336517234 39.0 37.0 39.0 35.0 39.0 10 36.988377780045056 39.0 37.0 39.0 33.0 39.0 11 36.72370121509812 39.0 35.0 39.0 32.0 39.0 12 36.13656493074281 38.0 35.0 39.0 32.0 39.0 13 35.89964144645746 38.0 35.0 39.0 31.0 39.0 14 36.800574025759495 39.0 35.0 41.0 31.0 41.0 15 37.04247175216727 39.0 35.0 41.0 32.0 41.0 16 37.11494199821533 39.0 35.0 41.0 32.0 41.0 17 37.03557396907759 38.0 35.0 41.0 32.0 41.0 18 36.92485072415184 38.0 35.0 40.0 32.0 41.0 19 36.8318802521859 38.0 35.0 40.0 31.0 41.0 20 36.64021848445539 38.0 35.0 40.0 31.0 41.0 21 36.51044445092238 38.0 35.0 40.0 31.0 41.0 22 36.41742053601649 38.0 35.0 40.0 31.0 41.0 23 36.361449987934854 38.0 35.0 40.0 31.0 41.0 24 36.35079540908951 38.0 35.0 40.0 31.0 41.0 25 36.27537486983405 38.0 35.0 40.0 31.0 41.0 26 36.172396802492706 38.0 35.0 40.0 30.0 41.0 27 36.0798834296116 38.0 35.0 40.0 30.0 41.0 28 36.02414730169835 38.0 35.0 40.0 30.0 41.0 29 35.90209496324583 38.0 35.0 40.0 30.0 41.0 30 35.7267944276828 37.0 34.0 40.0 29.0 41.0 31 35.507707929474755 37.0 34.0 40.0 29.0 41.0 32 35.32213015461205 37.0 34.0 40.0 28.0 41.0 33 35.094346627669516 37.0 34.0 40.0 27.0 41.0 34 34.84705885687171 37.0 34.0 40.0 25.0 41.0 35 34.64780859653981 37.0 33.0 40.0 24.0 41.0 36 34.446694716112724 37.0 33.0 40.0 23.0 41.0 37 34.25166968700252 37.0 33.0 40.0 23.0 41.0 38 34.13652525340861 36.0 33.0 40.0 23.0 41.0 39 34.05577094679836 36.0 33.0 40.0 23.0 41.0 40 33.805318706162616 36.0 33.0 40.0 22.0 41.0 41 33.67727428050418 36.0 33.0 40.0 21.0 41.0 42 33.579352239178206 36.0 33.0 40.0 21.0 41.0 43 33.54797475549855 35.0 32.0 40.0 21.0 41.0 44 33.29654961043336 35.0 32.0 40.0 20.0 41.0 45 33.274446096317135 35.0 32.0 40.0 20.0 41.0 46 33.22005454418841 35.0 32.0 39.0 20.0 41.0 47 33.15173179417666 35.0 32.0 39.0 20.0 41.0 48 33.062331472547335 35.0 32.0 39.0 20.0 41.0 49 33.03360670206857 35.0 32.0 39.0 20.0 41.0 50 32.89287362688083 35.0 32.0 39.0 20.0 41.0 51 32.716831772961434 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 4.0 12 7.0 13 13.0 14 45.0 15 112.0 16 278.0 17 793.0 18 1753.0 19 3287.0 20 5571.0 21 8858.0 22 13173.0 23 18453.0 24 26389.0 25 36891.0 26 47244.0 27 54493.0 28 58250.0 29 63572.0 30 73342.0 31 87340.0 32 107212.0 33 137597.0 34 222954.0 35 287097.0 36 195574.0 37 245821.0 38 333688.0 39 440030.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.238178988503286 23.433352605181373 28.161068923578213 14.16739948273712 2 34.35806121969745 24.8438818360403 28.110419591857887 12.687637352404366 3 29.90832916316453 24.776875725730832 31.827295090861096 13.487500020243537 4 26.728595697681385 27.436309781191646 30.193074766672982 15.642019754453983 5 23.47971030687584 31.360964952767777 30.085581580647826 15.073743159708558 6 20.737763591106447 41.44423067268467 27.66012233574798 10.157883400460904 7 85.63461871701315 4.435237683426696 8.079398394444526 1.850745205115623 8 86.44423877009982 3.7148916322931393 7.696957477234117 2.1439121203729345 9 81.77668624621649 5.2493113148420765 9.654548075163447 3.3194543637779947 10 45.42091173655546 25.068828028716673 15.49569946281748 14.014560771910393 11 38.694469951302146 23.770609945893074 21.84508511193057 15.689834990874212 12 34.0555013028741 22.04723708097901 28.06794864943213 15.829312966714765 13 24.41795779951124 30.300608439773857 28.65938385148693 16.622049909227975 14 18.882321885207805 33.897237323901464 30.114246430254532 17.1061943606362 15 17.62483380055419 23.28553429174339 41.559861760928676 17.529770146773746 16 20.87303091107257 19.40841094705748 38.64442792571755 21.0741302161524 17 21.157371643823858 19.35930012421435 29.275030324819713 30.208297907142086 18 24.277832030459237 22.900056843854305 31.39023710851022 21.431874017176238 19 28.79303168842442 24.66136609871397 25.79597590857047 20.749626304291144 20 29.519896158748203 23.939683974081795 25.003157991905823 21.53726187526418 21 25.955859370571726 25.337662211468853 28.21354017370575 20.49293824425367 22 23.989402103060662 22.722763939295298 27.4361883199645 25.85164563767954 23 22.308459693496644 27.191524921414583 26.629807232935104 23.87020815215367 24 22.76770459333971 24.974857525980557 32.26358381877337 19.993854061906358 25 22.945118959125868 23.510925842252636 30.4377381652229 23.1062170333986 26 19.92263729572246 28.217669855428753 27.393393480933014 24.466299367915774 27 20.85477123992479 27.68101366681728 29.41726142180893 22.046953671449 28 19.516430465066943 26.201332510635954 33.61508289323882 20.667154131058282 29 20.70788412922827 26.037643263517417 32.09787021786905 21.15660238938526 30 22.67644672467655 25.93921918245258 30.600091338842816 20.78424275402806 31 28.579219441569865 25.06951630900384 25.889217643943702 20.4620466054826 32 28.449741773431086 26.08914282382778 25.709576488993186 19.751538913747954 33 27.06249261110868 25.781157638858527 25.51827505623655 21.63807469379625 34 22.006466595733308 27.101279229644316 28.266254346287578 22.625999828334802 35 22.323237476132867 26.035821345110215 28.645942142349316 22.9949990364076 36 29.13239435707333 25.78184591914569 25.283207094631248 19.802552629149723 37 22.890258971531107 29.744680403121716 26.137929750065187 21.227130875281993 38 23.779679050853385 29.33742090849759 23.94199173739759 22.940908303251437 39 22.99904774397917 27.017835366594277 25.735690652829803 24.247426236596752 40 25.142028661610638 24.422249429537104 26.69094271726579 23.744779191586463 41 21.09291621928448 24.055760420158677 26.867547341537634 27.983776019019206 42 23.184600011984173 26.137079521475155 25.19814374855259 25.480176717988083 43 23.154356166424552 25.891889790940937 26.076591830355916 24.8771622122786 44 22.981516840194274 26.9822877141159 27.562791405727467 22.473404039962364 45 21.68135537773632 29.887721241625247 24.950686741778288 23.480236638860145 46 24.037986593919488 27.186099653268688 26.9146742976707 21.861239455141128 47 23.239540973730367 26.720336334235384 27.33594232049245 22.704180371541796 48 23.15042892008013 25.89472388624103 28.147262830759168 22.80758436291967 49 22.92884315468816 24.302205250040082 29.610020389291332 23.158931205980426 50 21.577303593146997 27.515300065912957 27.63805687948293 23.269339461457115 51 21.497584541062803 28.7532328929959 25.652935070066935 24.09624749587437 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1379.0 1 2354.5 2 3330.0 3 15840.5 4 28351.0 5 20388.0 6 12425.0 7 12644.5 8 12864.0 9 13201.5 10 13539.0 11 13420.0 12 13301.0 13 12779.0 14 12257.0 15 11685.5 16 11114.0 17 10734.5 18 10355.0 19 10150.5 20 9946.0 21 10354.0 22 10762.0 23 10594.5 24 10427.0 25 11679.5 26 14920.0 27 16908.0 28 19516.0 29 22124.0 30 26367.0 31 30610.0 32 36292.5 33 41975.0 34 47599.5 35 53224.0 36 56428.0 37 59632.0 38 67742.5 39 75853.0 40 95694.0 41 115535.0 42 136221.5 43 156908.0 44 166871.0 45 176834.0 46 185058.0 47 193282.0 48 193173.0 49 193064.0 50 187577.0 51 182090.0 52 171822.0 53 161554.0 54 152968.0 55 144382.0 56 143153.0 57 141924.0 58 136665.0 59 131406.0 60 122372.0 61 113338.0 62 100963.5 63 88589.0 64 80514.0 65 72439.0 66 60053.5 67 47668.0 68 40058.0 69 32448.0 70 27447.5 71 22447.0 72 18866.5 73 15286.0 74 11971.5 75 6666.0 76 4675.0 77 3422.0 78 2169.0 79 1539.5 80 910.0 81 728.0 82 546.0 83 392.0 84 238.0 85 171.0 86 104.0 87 86.5 88 69.0 89 49.5 90 30.0 91 21.0 92 12.0 93 8.5 94 5.0 95 6.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2469924.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.770071320440156 #Duplication Level Percentage of deduplicated Percentage of total 1 80.76414968898534 15.96712999485945 2 6.753250381494401 2.6702448337386797 3 2.3034559019853016 1.3661846239721467 4 1.2423384492461693 0.9824447898288716 5 0.8282038425322165 0.8186824517362252 6 0.6219821264748787 0.737797860026843 7 0.48540073843843107 0.671748505254547 8 0.3925403214627672 0.620844012117393 9 0.32546656640706706 0.5791047507257839 >10 3.8140985856362852 17.275466645358087 >50 1.2375694867464817 17.709187015702526 >100 1.2179082975723972 37.24011063465269 >500 0.009503609073361194 1.3226429954281205 >1k 0.003718803550445685 1.1799713882688831 >5k 2.0660019724698248E-4 0.21255741301364767 >10k+ 2.0660019724698248E-4 0.6458820853160666 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15813 0.6402221282922066 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5204 0.21069474202445093 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2751 0.11137994529386329 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 2585 0.10465909072505875 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05700580260769157 0.0 2 0.0 0.0 0.0 0.19449991173817494 0.0 3 0.0 0.0 0.0 0.30324819711051837 0.0 4 0.0 0.0 0.0 0.44325250493537455 0.0 5 0.0 0.0 0.0 0.7069853161473795 0.0 6 0.0 0.0 0.0 0.9785321329725125 0.0 7 0.0 0.0 0.0 1.1399541038509686 0.0 8 0.0 0.0 0.0 1.5547441945582132 0.0 9 0.0 0.0 0.0 1.748353390630643 0.0 10 0.0 0.0 0.0 2.082209816982223 0.0 11 0.0 0.0 0.0 2.378858620751084 0.0 12 0.0 0.0 0.0 2.6611749997165903 0.0 13 0.0 0.0 0.0 2.785713244618053 0.0 14 0.0 0.0 0.0 2.8340953000983027 0.0 15 0.0 0.0 0.0 2.9118709725481433 0.0 16 0.0 0.0 0.0 3.075438758439531 0.0 17 0.0 0.0 0.0 3.278521930229432 0.0 18 0.0 0.0 0.0 3.636306218328985 0.0 19 0.0 0.0 0.0 3.751491948740123 0.0 20 0.0 0.0 0.0 3.8929133042150283 0.0 21 0.0 0.0 0.0 4.02384850707957 0.0 22 0.0 0.0 0.0 4.163285995844406 0.0 23 0.0 0.0 0.0 4.3038166356535665 0.0 24 0.0 0.0 0.0 4.414184404054538 0.0 25 0.0 0.0 0.0 4.502162819584732 0.0 26 0.0 0.0 0.0 4.5962952706237115 0.0 27 0.0 0.0 0.0 4.711642949337713 0.0 28 0.0 0.0 0.0 4.824844813038782 0.0 29 0.0 0.0 0.0 4.950111825303127 0.0 30 0.0 0.0 0.0 5.086593757540718 0.0 31 0.0 0.0 0.0 5.2116988215022 0.0 32 0.0 0.0 0.0 5.328706470320545 0.0 33 0.0 0.0 0.0 5.452799357389134 0.0 34 0.0 0.0 0.0 5.586001836493755 0.0 35 0.0 0.0 0.0 5.733941611158886 0.0 36 0.0 0.0 0.0 5.865281684780585 0.0 37 0.0 0.0 0.0 5.997593448219459 0.0 38 0.0 0.0 0.0 6.146423938550336 0.0 39 0.0 0.0 0.0 6.360236185404895 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCGTT 25 3.8921127E-5 45.0 21 CGTTTTT 11220 0.0 43.175137 1 CGCATCG 100 0.0 42.75 21 CGTAAGG 150 0.0 42.000004 2 TATAGCG 75 0.0 42.000004 1 CGGTCTA 545 0.0 41.697247 31 CACGACG 560 0.0 41.383926 26 TCACGAC 575 0.0 40.304348 25 ACGGTCT 570 0.0 40.263157 30 ACTAACG 45 1.9297659E-8 40.0 1 TACAAGG 890 0.0 39.69101 2 TAGTAGG 1005 0.0 39.626865 2 TTACGGG 615 0.0 39.512196 3 CGCGATA 40 3.4603727E-7 39.375 11 AGGGCGA 2655 0.0 39.067795 6 GTACAAG 780 0.0 38.94231 1 GTGCAAG 570 0.0 38.68421 1 AACGGGA 635 0.0 38.622047 4 CAATTCG 35 6.2512045E-6 38.571426 32 TAACGCC 175 0.0 38.571426 12 >>END_MODULE