SRR1546363_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546363_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2628011
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10085	0.38375029632676577	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5504	0.20943595745984317	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	5490	0.2089032351843276	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	4032	0.1534240153484898	No Hit
GTGCAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	3339	0.1270542627104681	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	3288	0.12511363156394703	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2836	0.10791431238301515	No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2832	0.10776210601858212	No Hit
GTACGAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2810	0.10692497101420047	No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2727	0.10376668895221519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	25	3.89218E-5	45.000004	1
GTCGAAA	25	3.89218E-5	45.000004	25
GTACGAC	20	7.0349453E-4	45.0	34
CGTTTTT	8065	0.0	43.242405	1
TACGTAG	115	0.0	43.043476	1
TGTAACG	95	0.0	42.63158	1
AATACGG	245	0.0	41.32653	2
TACGCGG	205	0.0	40.609753	2
CGACGGT	600	0.0	40.5	28
CGCATCG	300	0.0	39.75	21
TACGGGA	615	0.0	39.512196	4
GTACGAG	480	0.0	39.375004	1
CATATGC	1915	0.0	39.360313	33
CACGACG	620	0.0	39.19355	26
CGGTCTA	625	0.0	38.88	31
GCGATAT	290	0.0	38.793102	9
TATAGCG	145	0.0	38.793102	1
CTCGCTA	35	6.2513573E-6	38.571426	38
ACGGTCT	650	0.0	38.423077	30
TAGCATA	1990	0.0	38.103016	30