SRR1546362_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546362_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1860760
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8589	0.4615855886841935	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5162	0.27741352995550206	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2112	0.11350200993142587	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	1868	0.10038908832949978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAC	45	3.8562575E-10	45.000004	9
TATACGA	45	3.8562575E-10	45.000004	22
ACGCATA	20	7.034414E-4	45.0	32
GTTACGT	25	3.8917402E-5	45.0	45
GTTACGA	25	3.8917402E-5	45.0	34
TCGCTAA	25	3.8917402E-5	45.0	15
CGTACGT	25	3.8917402E-5	45.0	27
ACGTCGT	20	7.034414E-4	45.0	31
CGTAATC	25	3.8917402E-5	45.0	34
TTGACGT	30	2.166229E-6	44.999996	12
CGTTTTT	7185	0.0	43.34029	1
CGTTAGG	395	0.0	41.582275	2
CTATGCG	60	3.6379788E-12	41.249996	1
CGGTCTA	235	0.0	41.17021	31
ACGTAAG	55	6.184564E-11	40.909092	1
CTAACGG	105	0.0	40.714287	2
CTATACG	50	1.0822987E-9	40.5	1
GGCGTAA	50	1.0822987E-9	40.5	8
TATACGG	370	0.0	40.135136	2
TGCAACG	40	3.4597542E-7	39.375	1