##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546362_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1860760 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.084187106343645 31.0 31.0 33.0 30.0 34.0 2 31.411042262301425 31.0 31.0 34.0 30.0 34.0 3 31.50148971388035 31.0 31.0 34.0 30.0 34.0 4 35.35160579548142 37.0 35.0 37.0 33.0 37.0 5 35.266501859455275 37.0 35.0 37.0 33.0 37.0 6 35.31023452782734 37.0 35.0 37.0 32.0 37.0 7 35.738869601668135 37.0 35.0 37.0 35.0 37.0 8 35.63985253337346 37.0 35.0 37.0 35.0 37.0 9 37.40081310862228 39.0 37.0 39.0 35.0 39.0 10 36.84867151056557 39.0 37.0 39.0 32.0 39.0 11 36.53709290827404 39.0 35.0 39.0 32.0 39.0 12 35.75776779380468 37.0 35.0 39.0 31.0 39.0 13 35.37103065414132 37.0 35.0 39.0 30.0 39.0 14 36.266457791440054 38.0 35.0 40.0 30.0 41.0 15 36.578345407252954 38.0 35.0 40.0 31.0 41.0 16 36.69336830112427 38.0 35.0 40.0 31.0 41.0 17 36.631748855306434 38.0 35.0 40.0 31.0 41.0 18 36.562074636170166 38.0 35.0 40.0 31.0 41.0 19 36.42530417678798 38.0 35.0 40.0 31.0 41.0 20 36.25007093875621 37.0 35.0 40.0 31.0 41.0 21 36.06954900148327 37.0 34.0 40.0 30.0 41.0 22 35.96049624884456 37.0 34.0 40.0 30.0 41.0 23 35.91630355338679 37.0 34.0 40.0 30.0 41.0 24 35.87287022506933 37.0 34.0 40.0 30.0 41.0 25 35.787252520475505 37.0 34.0 40.0 30.0 41.0 26 35.65523979449257 37.0 34.0 40.0 30.0 41.0 27 35.53774855435414 37.0 34.0 40.0 29.0 41.0 28 35.4935623078742 36.0 34.0 40.0 29.0 41.0 29 35.423040048152366 36.0 34.0 40.0 29.0 41.0 30 35.27145951116748 36.0 34.0 40.0 29.0 41.0 31 35.06066660934242 36.0 34.0 40.0 27.0 41.0 32 34.8488735785378 36.0 34.0 40.0 27.0 41.0 33 34.66404856080311 36.0 33.0 40.0 25.0 41.0 34 34.45434553623251 36.0 33.0 40.0 24.0 41.0 35 34.288162901180165 36.0 33.0 40.0 24.0 41.0 36 34.07706421032266 36.0 33.0 40.0 23.0 41.0 37 33.88124368537587 35.0 33.0 40.0 23.0 41.0 38 33.8108864120037 35.0 33.0 40.0 23.0 41.0 39 33.79128420645328 35.0 33.0 40.0 23.0 41.0 40 33.56565274404007 35.0 32.0 40.0 22.0 41.0 41 33.47485543541349 35.0 32.0 40.0 22.0 41.0 42 33.3525957135794 35.0 32.0 39.0 21.0 41.0 43 33.27379887787786 35.0 32.0 39.0 22.0 41.0 44 33.0767170403491 35.0 32.0 39.0 21.0 41.0 45 33.02645316967261 35.0 32.0 39.0 21.0 41.0 46 32.95394408736215 35.0 32.0 39.0 20.0 41.0 47 32.88610513983534 35.0 31.0 39.0 20.0 41.0 48 32.8100104258475 35.0 31.0 39.0 20.0 41.0 49 32.823630667039275 35.0 31.0 39.0 20.0 40.0 50 32.65905866420172 35.0 31.0 39.0 20.0 40.0 51 32.43360777316795 35.0 31.0 38.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 0.0 12 4.0 13 15.0 14 37.0 15 97.0 16 266.0 17 638.0 18 1353.0 19 2724.0 20 4647.0 21 7169.0 22 10937.0 23 15827.0 24 21728.0 25 29498.0 26 37670.0 27 43250.0 28 47278.0 29 52528.0 30 60213.0 31 71531.0 32 87559.0 33 111740.0 34 186975.0 35 248133.0 36 138484.0 37 168629.0 38 226915.0 39 284862.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.078118618199014 23.24168619273845 28.567252090543647 14.112943098518885 2 31.204024162170295 24.96925987231024 30.66811410391453 13.158601861604936 3 29.651432747909457 24.740374900578257 32.37918914851996 13.229003202992326 4 25.834121541735634 27.77580128549625 31.422053354543305 14.968023818224813 5 22.867108063371955 32.93879920032675 30.10355983576603 14.090532900535266 6 20.50404135944453 41.46047851415551 27.192168791246583 10.843311335153379 7 86.83317569165287 4.081181882671596 7.201573550592231 1.8840688750832995 8 88.40468410756895 3.100990992927621 6.35960575248823 2.1347191470151983 9 84.50654571250456 4.169156688664847 8.401728326060319 2.922569272770266 10 51.7111287860874 21.00088136030439 14.26180700358993 13.026182850018273 11 43.69456566134268 21.048173864442486 19.93959457425998 15.317665899954857 12 38.09620800103183 19.754885100711537 25.7271222511232 16.421784647133432 13 23.328747393538123 33.82639351662761 26.1915023968701 16.653356692964167 14 18.036178765665642 36.93727294223865 28.21239708506202 16.814151207033685 15 16.3434833078957 21.67329478277693 45.424020292783595 16.559201616543778 16 18.034136589350588 16.94130355338679 43.25528278767815 21.76927706958447 17 18.80075882972549 17.121230035039446 29.349835551065155 34.728175584169904 18 23.740407145467444 21.305971753477074 32.88629377243707 22.067327328618415 19 29.480266127818737 23.250016122444592 24.95781293664954 22.311904813087125 20 31.488262860336636 22.403211590962833 23.97273157204583 22.1357939766547 21 24.194630151121046 25.968421505191426 26.96699198177089 22.869956361916636 22 23.796943184505256 22.95411552268965 25.244899933360564 28.004041359444525 23 21.962208989875105 27.849857047657945 24.3704722801436 25.81746168232335 24 23.04671209613276 23.377383434725594 33.43811130935747 20.137793159784174 25 21.308927534985706 22.13063479438509 32.12724908102066 24.433188589608548 26 19.543466110621466 28.85992820138008 27.285732711365245 24.310872976633206 27 19.784335432833895 27.554493862722758 29.564908961929536 23.096261742513814 28 18.154839957866677 25.507910746146734 36.05155957780692 20.28568971817967 29 18.94032545841484 23.890722070551817 34.64922934714848 22.519723123884862 30 21.50986693609063 25.65043315634472 30.88985145854382 21.94984844902083 31 29.309636922547778 23.938283282099786 23.809035017949657 22.943044777402783 32 29.454308992024764 25.020690470560414 25.559663793288763 19.965336744126056 33 27.059319847804126 25.74722156538189 24.931855800855566 22.261602785958427 34 20.54477740278166 27.163632064317806 27.913164513424622 24.378426019475913 35 21.522227476944906 25.299017605709494 28.933715256131904 24.245039661213696 36 28.92957716201982 24.538521894279757 25.753563060254947 20.778337883445474 37 22.315290526451555 29.175659407983833 26.70129409488596 21.807755970678645 38 22.36027214686472 30.02971903953223 22.45915647369892 25.150852339904123 39 21.79630903501795 27.559223113136568 25.02042176315054 25.62404608869494 40 23.490670478729122 24.320438960424774 24.699961306132977 27.488929254713128 41 19.836410928867775 22.48199660353834 26.468647219415725 31.212945248178166 42 23.773888088737934 24.659816419097574 23.4050065564608 28.161288935703695 43 23.484812657193835 25.609052215223887 24.407500161224448 26.49863496635783 44 22.086996711021303 27.81159311249167 26.490520002579593 23.610890173907435 45 20.368505341903308 31.58564242567553 23.7834540725295 24.262398159891656 46 23.725359530514414 28.37657731249597 26.36777445774845 21.530288699241172 47 23.542477267353124 26.188761581289366 26.362883982888714 23.9058771684688 48 23.955588039295773 23.393452137836153 27.19985382316903 25.45110599969905 49 21.745953266407277 22.36763472989531 30.21733055310733 25.66908145059008 50 21.13136567853995 27.386712955996472 27.52945033212236 23.952471033341215 51 20.335669296416516 30.14112513166663 24.457479739461295 25.065725832455556 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 630.0 1 1172.5 2 1715.0 3 8804.5 4 15894.0 5 11757.5 6 7621.0 7 7812.0 8 8003.0 9 8330.0 10 8657.0 11 8513.5 12 8370.0 13 7958.5 14 7547.0 15 7242.0 16 6937.0 17 6240.5 18 5544.0 19 5202.0 20 4860.0 21 5183.5 22 5507.0 23 5091.0 24 4675.0 25 5460.0 26 6650.5 27 7056.0 28 9265.0 29 11474.0 30 13323.0 31 15172.0 32 19229.5 33 23287.0 34 25814.0 35 28341.0 36 31140.0 37 33939.0 38 42811.0 39 51683.0 40 71540.0 41 91397.0 42 115357.5 43 139318.0 44 150638.5 45 161959.0 46 160413.0 47 158867.0 48 158385.5 49 157904.0 50 154775.5 51 151647.0 52 140565.5 53 129484.0 54 120450.5 55 111417.0 56 106575.0 57 101733.0 58 98634.0 59 95535.0 60 90857.5 61 86180.0 62 76966.0 63 67752.0 64 57941.0 65 48130.0 66 42054.0 67 35978.0 68 29402.5 69 22827.0 70 19022.5 71 15218.0 72 12730.5 73 10243.0 74 8367.5 75 4633.5 76 2775.0 77 2135.0 78 1495.0 79 1051.5 80 608.0 81 495.5 82 383.0 83 258.0 84 133.0 85 98.0 86 63.0 87 43.5 88 24.0 89 18.5 90 13.0 91 12.5 92 12.0 93 12.5 94 13.0 95 7.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1860760.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.70237046148081 #Duplication Level Percentage of deduplicated Percentage of total 1 77.33768182489942 18.33086385245897 2 8.497243944245508 4.028096477361628 3 3.597115734588187 2.557805092020927 4 2.0333067285047366 1.927767573633634 5 1.3678238050065057 1.6210333276148248 6 0.9615804218188019 1.3675041231873737 7 0.7328604653787578 1.2159371172886386 8 0.5529721112917435 1.048539986936328 9 0.42941920149546414 0.9160427697406888 >10 2.623168933948086 13.103985426649079 >50 0.8537618358882304 14.810012726079178 >100 1.0048583459013363 36.776678805969595 >500 0.005927022857312724 0.9202274518066041 >1k 0.0018236993407116076 0.6325044067199875 >5k 4.559248351779019E-4 0.7430008625325943 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8589 0.4615855886841935 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5162 0.27741352995550206 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 2112 0.11350200993142587 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1868 0.10038908832949978 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.059276854618542964 0.0 2 0.0 0.0 0.0 0.21781422644510845 0.0 3 0.0 0.0 0.0 0.311055697671919 0.0 4 0.0 0.0 0.0 0.46104817386444247 0.0 5 5.3741481975106946E-5 0.0 0.0 0.7779616930716482 0.0 6 5.3741481975106946E-5 0.0 0.0 1.0986908574990863 0.0 7 5.3741481975106946E-5 0.0 0.0 1.3201595047185022 0.0 8 5.3741481975106946E-5 0.0 0.0 1.9881123841871065 0.0 9 5.3741481975106946E-5 0.0 0.0 2.2791762505642854 0.0 10 5.3741481975106946E-5 0.0 0.0 2.776768632171801 0.0 11 5.3741481975106946E-5 0.0 0.0 3.0836862357316366 0.0 12 5.3741481975106946E-5 0.0 0.0 3.4212902254992583 0.0 13 5.3741481975106946E-5 0.0 0.0 3.589930995937144 0.0 14 5.3741481975106946E-5 0.0 0.0 3.631634385949827 0.0 15 5.3741481975106946E-5 0.0 0.0 3.725628237924289 0.0 16 5.3741481975106946E-5 0.0 0.0 3.8916894172273695 0.0 17 5.3741481975106946E-5 0.0 0.0 4.074356714460758 0.0 18 5.3741481975106946E-5 0.0 0.0 4.388421935123283 0.0 19 5.3741481975106946E-5 0.0 0.0 4.501064081343107 0.0 20 5.3741481975106946E-5 0.0 0.0 4.633859283303597 0.0 21 5.3741481975106946E-5 0.0 0.0 4.775038156452203 0.0 22 5.3741481975106946E-5 0.0 0.0 4.927448999333605 0.0 23 5.3741481975106946E-5 0.0 0.0 5.1003890883295 0.0 24 5.3741481975106946E-5 0.0 0.0 5.225499258367549 0.0 25 5.3741481975106946E-5 0.0 0.0 5.332552290461962 0.0 26 5.3741481975106946E-5 0.0 0.0 5.429071992089254 0.0 27 5.3741481975106946E-5 0.0 0.0 5.525699176680496 0.0 28 5.3741481975106946E-5 0.0 0.0 5.630763773941831 0.0 29 5.3741481975106946E-5 0.0 0.0 5.748027687611514 0.0 30 5.3741481975106946E-5 0.0 0.0 5.894956899331456 0.0 31 5.3741481975106946E-5 0.0 0.0 6.025817407940841 0.0 32 5.3741481975106946E-5 0.0 0.0 6.153077237257895 0.0 33 5.3741481975106946E-5 0.0 0.0 6.279853393237172 0.0 34 5.3741481975106946E-5 0.0 0.0 6.412487370751736 0.0 35 5.3741481975106946E-5 0.0 0.0 6.577151271523464 0.0 36 5.3741481975106946E-5 0.0 0.0 6.709838990520002 0.0 37 5.3741481975106946E-5 0.0 0.0 6.848706979943679 0.0 38 5.3741481975106946E-5 0.0 0.0 6.986016466390077 0.0 39 5.3741481975106946E-5 0.0 0.0 7.144123906360842 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGAC 45 3.8562575E-10 45.000004 9 TATACGA 45 3.8562575E-10 45.000004 22 ACGCATA 20 7.034414E-4 45.0 32 GTTACGT 25 3.8917402E-5 45.0 45 GTTACGA 25 3.8917402E-5 45.0 34 TCGCTAA 25 3.8917402E-5 45.0 15 CGTACGT 25 3.8917402E-5 45.0 27 ACGTCGT 20 7.034414E-4 45.0 31 CGTAATC 25 3.8917402E-5 45.0 34 TTGACGT 30 2.166229E-6 44.999996 12 CGTTTTT 7185 0.0 43.34029 1 CGTTAGG 395 0.0 41.582275 2 CTATGCG 60 3.6379788E-12 41.249996 1 CGGTCTA 235 0.0 41.17021 31 ACGTAAG 55 6.184564E-11 40.909092 1 CTAACGG 105 0.0 40.714287 2 CTATACG 50 1.0822987E-9 40.5 1 GGCGTAA 50 1.0822987E-9 40.5 8 TATACGG 370 0.0 40.135136 2 TGCAACG 40 3.4597542E-7 39.375 1 >>END_MODULE