##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546361_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2272986 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.183542705498407 31.0 31.0 33.0 30.0 34.0 2 31.529508320772763 31.0 31.0 34.0 30.0 34.0 3 31.638319373722496 31.0 31.0 34.0 30.0 34.0 4 35.50654161530252 37.0 35.0 37.0 33.0 37.0 5 35.43933442616893 37.0 35.0 37.0 33.0 37.0 6 35.48059028960143 37.0 35.0 37.0 33.0 37.0 7 35.83755553267816 37.0 35.0 37.0 35.0 37.0 8 35.73786728118871 37.0 35.0 37.0 35.0 37.0 9 37.52230502079643 39.0 37.0 39.0 35.0 39.0 10 36.83549260752156 39.0 37.0 39.0 32.0 39.0 11 36.70232768701611 39.0 35.0 39.0 32.0 39.0 12 36.2897215381001 38.0 35.0 39.0 32.0 39.0 13 36.122017469531265 38.0 35.0 39.0 32.0 39.0 14 37.083133816046384 39.0 35.0 41.0 31.0 41.0 15 37.263910996372175 39.0 35.0 41.0 32.0 41.0 16 37.281552988007846 39.0 35.0 41.0 32.0 41.0 17 37.207859177311256 39.0 35.0 41.0 32.0 41.0 18 37.111742439240714 39.0 35.0 41.0 32.0 41.0 19 37.03189020961854 38.0 35.0 41.0 32.0 41.0 20 36.88717132441643 38.0 35.0 41.0 31.0 41.0 21 36.77064398988819 38.0 35.0 41.0 31.0 41.0 22 36.68292853541553 38.0 35.0 40.0 31.0 41.0 23 36.595807893229434 38.0 35.0 40.0 31.0 41.0 24 36.60558929971412 38.0 35.0 40.0 31.0 41.0 25 36.55064835419136 38.0 35.0 40.0 31.0 41.0 26 36.48038527294053 38.0 35.0 40.0 31.0 41.0 27 36.376418948466906 38.0 35.0 40.0 30.0 41.0 28 36.307603742389965 38.0 35.0 40.0 30.0 41.0 29 36.21051779465426 38.0 35.0 40.0 30.0 41.0 30 36.04702668648201 38.0 35.0 40.0 30.0 41.0 31 35.865568463686095 38.0 34.0 40.0 29.0 41.0 32 35.712651111797435 38.0 34.0 40.0 29.0 41.0 33 35.53641905405489 38.0 34.0 40.0 28.0 41.0 34 35.28789662584811 38.0 34.0 40.0 26.0 41.0 35 35.08459972916683 38.0 34.0 40.0 26.0 41.0 36 34.90047540987934 38.0 34.0 40.0 25.0 41.0 37 34.74548325418635 37.0 33.0 40.0 24.0 41.0 38 34.63698588552679 37.0 33.0 40.0 24.0 41.0 39 34.55696603498658 37.0 33.0 40.0 24.0 41.0 40 34.36751876166417 37.0 33.0 40.0 23.0 41.0 41 34.250649586051125 37.0 33.0 40.0 23.0 41.0 42 34.14947650359483 37.0 33.0 40.0 23.0 41.0 43 34.12408171453762 36.0 33.0 40.0 23.0 41.0 44 33.95392580508635 36.0 33.0 40.0 23.0 41.0 45 33.893637708283286 36.0 33.0 40.0 23.0 41.0 46 33.81341504083175 36.0 33.0 40.0 23.0 41.0 47 33.750856802461605 35.0 33.0 40.0 23.0 41.0 48 33.64792392034091 35.0 33.0 40.0 23.0 41.0 49 33.62184808881357 35.0 32.0 39.0 23.0 41.0 50 33.50997146484844 35.0 32.0 39.0 22.0 41.0 51 33.319254056118254 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 4.0 12 8.0 13 14.0 14 50.0 15 102.0 16 248.0 17 558.0 18 1297.0 19 2399.0 20 4267.0 21 6670.0 22 10043.0 23 14653.0 24 21074.0 25 29122.0 26 38655.0 27 44430.0 28 48405.0 29 53994.0 30 63149.0 31 76370.0 32 94409.0 33 120501.0 34 190405.0 35 239360.0 36 187051.0 37 244932.0 38 339411.0 39 441337.0 40 64.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.39892986582407 23.503092407960278 28.567971822087774 14.530005904127874 2 32.00516853161436 24.65237357379236 30.006564052748235 13.335893841845046 3 29.688568253390034 24.84467568212035 32.264167047223346 13.202589017266275 4 25.83883050753502 27.540952737940312 31.02887567279341 15.591341081731255 5 22.638898787762002 32.18022460323117 30.359931825361002 14.820944783645828 6 20.13184419085731 42.146981987570534 26.753970328017857 10.967203493554294 7 88.74700504094614 3.2938170318690925 6.409586332691887 1.5495915944928829 8 90.13759873575992 2.3393896838783874 6.096781942343683 1.4262296380180082 9 85.89023425573232 3.3987450868593116 8.04980760990169 2.661213047506672 10 40.96699231759457 21.324504418417007 23.839214143861863 13.869289120126565 11 37.38958356980641 23.45878945140885 21.51253901255881 17.639087966225926 12 32.290388062222995 21.46075690743366 27.6153922637447 18.633462766598647 13 25.51850297362148 26.809404017446653 27.47755595503008 20.194537053901783 14 22.12257356622522 29.660103493818262 29.155480940049785 19.061841999906733 15 21.792699119132276 22.050685749934225 36.5269737693061 19.629641361627392 16 23.365960019111423 19.62607776730697 34.98970077246406 22.01826144111754 17 23.31369396907856 20.046889862058105 28.384028762165713 28.255387406697626 18 25.84705757096612 22.55332852908025 30.531600282623828 21.068013617329804 19 28.307477476764042 24.97564877214378 25.502400806692165 21.214472944400008 20 29.172111046878424 24.25017136049232 25.010932755415123 21.566784837214133 21 26.6631646653345 25.11242920105975 27.579976295498522 20.644429838107232 22 25.813533387359183 21.39098085073995 27.31341064133259 25.482075120568275 23 23.99975186824732 26.562768094480127 25.944242507432953 23.493237529839604 24 23.632481678285743 25.037945680263757 30.62962112393125 20.699951517519246 25 23.607492523051178 23.603928928730753 28.332906581914713 24.455671966303356 26 22.3945506043592 25.52585013722038 26.50693845012684 25.572660808293584 27 21.46379256185476 25.274418760168345 29.383902936489708 23.87788574148719 28 20.621244477528677 25.518151013688602 31.988890384718605 21.871714124064116 29 21.724990827044248 25.50662432588674 30.471635109059186 22.296749738009826 30 23.515059045678242 24.49966695791351 30.708152183955377 21.27712181245287 31 27.990273587254826 23.577135978840168 26.052030236877833 22.380560197027172 32 26.987539738476173 24.75171426484809 26.72585752837897 21.53488846829677 33 26.49585171224108 24.54190214985926 26.425679700622883 22.536566437276782 34 22.095736621343026 26.395719111336362 28.805676761757443 22.70286750556317 35 23.260636009196713 25.647012344114746 28.812451990465405 22.279899656223133 36 27.47126467122983 26.38181669398756 24.810975518546968 21.335943116235647 37 24.010530641191806 27.72471981789593 26.166021260139743 22.098728280772516 38 24.6269884636333 28.01020331845423 23.581931432925675 23.780876784986795 39 23.332919780412197 26.724097728714565 24.840804122858653 25.102178368014584 40 24.68932936674489 23.761211023737058 26.494531862492778 25.05492774702528 41 22.155349834974785 23.726498975356645 27.284373946869888 26.83377724279868 42 23.719987716598343 25.341291147415777 25.27340687536131 25.665314260624573 43 23.219148732108337 25.786168502577667 25.890348642710514 25.104334122603483 44 23.40986702073836 25.982430160150567 27.01750032776269 23.590202491348386 45 22.971104969410284 27.27284725906803 25.797871170345964 23.958176601175722 46 23.61096812738838 26.027393041576147 27.23127199199643 23.130366839039045 47 23.981317966762663 26.20165720334397 27.157580381049424 22.659444448843942 48 23.690291097261486 25.768350530975553 27.403028439242476 23.13832993252048 49 22.689009083205967 24.519288724171638 28.60303583040107 24.188666362221326 50 22.622928605807516 25.960916609253204 28.10734425992945 23.308810525009832 51 22.943476114679104 27.090268043885885 26.11397518506493 23.852280656370077 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 688.0 1 1620.0 2 2552.0 3 12193.5 4 21835.0 5 15795.5 6 9756.0 7 9726.5 8 9697.0 9 9583.5 10 9470.0 11 9415.5 12 9361.0 13 8928.0 14 8495.0 15 8016.0 16 7537.0 17 6981.5 18 6426.0 19 6045.5 20 5665.0 21 6256.5 22 6848.0 23 6875.0 24 6902.0 25 7644.5 26 10147.0 27 11907.0 28 14566.5 29 17226.0 30 20545.0 31 23864.0 32 28533.0 33 33202.0 34 40939.5 35 48677.0 36 53162.0 37 57647.0 38 63487.5 39 69328.0 40 85271.0 41 101214.0 42 116452.5 43 131691.0 44 136713.0 45 141735.0 46 154372.5 47 167010.0 48 173679.5 49 180349.0 50 178039.0 51 175729.0 52 170390.0 53 165051.0 54 157921.0 55 150791.0 56 144914.5 57 139038.0 58 135636.5 59 132235.0 60 122389.5 61 112544.0 62 102953.0 63 93362.0 64 84441.5 65 75521.0 66 63129.5 67 50738.0 68 40750.5 69 30763.0 70 25153.0 71 19543.0 72 16292.5 73 13042.0 74 10554.5 75 5991.0 76 3915.0 77 3260.0 78 2605.0 79 1879.0 80 1153.0 81 962.0 82 771.0 83 581.0 84 391.0 85 260.0 86 129.0 87 95.0 88 61.0 89 51.0 90 41.0 91 26.5 92 12.0 93 9.0 94 6.0 95 6.0 96 6.0 97 4.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2272986.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.65436845463369 #Duplication Level Percentage of deduplicated Percentage of total 1 78.04068202188456 15.338403189090263 2 6.445091080511636 2.5334838964009774 3 2.435979357567979 1.4363290752456876 4 1.4717942587524875 1.1570874660374344 5 0.9792618889376332 0.9623386989380409 6 0.7827408613313396 0.9230566375862089 7 0.6353466644409648 0.8741136207541663 8 0.538034542154278 0.8459783306256259 9 0.4533907661269025 0.8019998254248113 >10 5.5208146155152065 25.656854025501914 >50 1.8966788952789766 26.94760915076111 >100 0.7907340454088594 20.156467917596906 >500 0.005850620340902239 0.7511074536718388 >1k 0.003375357888982061 1.1132825074384696 >5k 0.0 0.0 >10k+ 2.250238592654707E-4 0.5018882049265753 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11348 0.4992551647920401 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3393 0.14927500653325626 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2295 0.10096850574530597 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2282 0.10039657085437394 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023581315503043133 0.0 2 0.0 0.0 0.0 0.07773915017514406 0.0 3 0.0 0.0 0.0 0.11231921358072597 0.0 4 0.0 0.0 0.0 0.15653418014893183 0.0 5 0.0 0.0 0.0 0.25816261076839014 0.0 6 0.0 0.0 0.0 0.391159470405889 0.0 7 0.0 0.0 0.0 0.4916880262350934 0.0 8 0.0 0.0 0.0 0.8133794048885475 0.0 9 0.0 0.0 0.0 0.9999621643072153 0.0 10 0.0 0.0 0.0 1.3203776882039748 0.0 11 0.0 0.0 0.0 1.5619101921437264 0.0 12 0.0 0.0 0.0 1.7641111735839992 0.0 13 0.0 0.0 0.0 1.850033392198632 0.0 14 0.0 0.0 0.0 1.882369711032096 0.0 15 0.0 0.0 0.0 1.9282124922898778 0.0 16 0.0 0.0 0.0 2.022977704218152 0.0 17 0.0 0.0 0.0 2.130897418637862 0.0 18 0.0 0.0 0.0 2.2938108725702664 0.0 19 0.0 0.0 0.0 2.36279501941499 0.0 20 0.0 0.0 0.0 2.4509169876101304 0.0 21 0.0 0.0 0.0 2.5502136836742504 0.0 22 0.0 0.0 0.0 2.649598369721591 0.0 23 0.0 0.0 0.0 2.761697608344266 0.0 24 0.0 0.0 0.0 2.8443641975797473 0.0 25 0.0 0.0 0.0 2.920167568124045 0.0 26 0.0 0.0 0.0 2.9932432491885126 0.0 27 0.0 0.0 0.0 3.0776696380884 0.0 28 0.0 0.0 0.0 3.158488437676255 0.0 29 0.0 0.0 0.0 3.2486341754854626 0.0 30 0.0 0.0 0.0 3.3615253239571206 0.0 31 0.0 0.0 0.0 3.4513630968250575 0.0 32 0.0 0.0 0.0 3.5427846893909596 0.0 33 0.0 0.0 0.0 3.6436212101614354 0.0 34 0.0 0.0 0.0 3.742038006393352 0.0 35 0.0 0.0 0.0 3.855237119806281 0.0 36 0.0 0.0 0.0 3.952114091331843 0.0 37 0.0 0.0 0.0 4.056778176372402 0.0 38 0.0 0.0 0.0 4.188059231337105 0.0 39 0.0 0.0 0.0 4.400247075872882 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTATA 35 1.2126293E-7 45.0 14 TATAGCG 130 0.0 44.999996 1 CGTTTTT 8570 0.0 43.109684 1 TCGTAAG 110 0.0 42.954544 1 CGTAAGG 415 0.0 40.12048 2 TACGGGT 395 0.0 39.873417 4 ACGTAAG 130 0.0 39.80769 1 ATAACGG 155 0.0 39.193546 2 CTATACG 75 0.0 39.000004 1 TAACGGG 550 0.0 38.863636 3 CGGTCTA 285 0.0 38.68421 31 CCGTCTA 35 6.250986E-6 38.571426 19 AGGGTAA 1285 0.0 38.5214 6 TAGGGTA 1660 0.0 38.493973 5 AGGGTAT 1595 0.0 38.087772 6 GGTCGAA 65 9.094947E-12 38.07692 8 TACGCGG 130 0.0 38.07692 2 TAGGGAC 1460 0.0 38.065067 5 GTAGGGT 2150 0.0 37.674416 4 ATAGGGT 1725 0.0 37.173912 4 >>END_MODULE