##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546360_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1743055 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.268497551712368 31.0 31.0 33.0 30.0 34.0 2 31.603803092845606 31.0 31.0 34.0 30.0 34.0 3 31.658749723904293 31.0 31.0 34.0 30.0 34.0 4 35.50942282372042 37.0 35.0 37.0 33.0 37.0 5 35.42206356081707 37.0 35.0 37.0 33.0 37.0 6 35.47756037531805 37.0 35.0 37.0 33.0 37.0 7 35.852060893087135 37.0 35.0 37.0 35.0 37.0 8 35.76667861886171 37.0 35.0 37.0 35.0 37.0 9 37.54667982364297 39.0 37.0 39.0 35.0 39.0 10 37.11142677655037 39.0 37.0 39.0 33.0 39.0 11 36.77908786584474 39.0 35.0 39.0 32.0 39.0 12 35.669723560071255 37.0 35.0 39.0 31.0 39.0 13 35.17255164065391 37.0 35.0 39.0 30.0 39.0 14 36.01686579023611 38.0 35.0 40.0 30.0 41.0 15 36.414130936774804 38.0 35.0 40.0 31.0 41.0 16 36.58339008235541 38.0 35.0 40.0 32.0 41.0 17 36.534984266130444 38.0 35.0 40.0 32.0 41.0 18 36.46732145571998 37.0 35.0 40.0 31.0 41.0 19 36.33174340453973 37.0 35.0 40.0 31.0 41.0 20 36.15299173003721 36.0 35.0 40.0 31.0 41.0 21 35.98898313593088 36.0 34.0 40.0 31.0 41.0 22 35.875111227127086 36.0 34.0 40.0 31.0 41.0 23 35.86033372440915 35.0 34.0 40.0 31.0 41.0 24 35.83256179523882 35.0 34.0 40.0 31.0 41.0 25 35.749446230899196 35.0 34.0 40.0 31.0 41.0 26 35.65112862187367 35.0 34.0 40.0 30.0 41.0 27 35.50744927727467 35.0 34.0 40.0 30.0 41.0 28 35.49087435565716 36.0 34.0 40.0 30.0 41.0 29 35.4976544056269 36.0 34.0 40.0 30.0 41.0 30 35.38232069556038 36.0 34.0 40.0 30.0 41.0 31 35.13389479964774 35.0 34.0 40.0 29.0 41.0 32 34.887775772996264 35.0 34.0 40.0 29.0 41.0 33 34.676085952537356 35.0 34.0 40.0 27.0 41.0 34 34.448752334263695 35.0 34.0 40.0 25.0 41.0 35 34.26832371898764 35.0 33.0 40.0 24.0 41.0 36 34.036637971836804 35.0 33.0 40.0 23.0 41.0 37 33.85948119824102 35.0 33.0 40.0 23.0 41.0 38 33.84268195782692 35.0 33.0 40.0 23.0 41.0 39 33.816547383760124 35.0 33.0 40.0 23.0 41.0 40 33.560486043182806 35.0 33.0 39.0 23.0 41.0 41 33.53077900582598 35.0 33.0 39.0 23.0 41.0 42 33.42154378375898 35.0 33.0 39.0 23.0 41.0 43 33.34069607671588 35.0 33.0 39.0 23.0 41.0 44 33.14025317617631 35.0 32.0 39.0 22.0 41.0 45 33.105496957927315 35.0 32.0 39.0 23.0 41.0 46 33.044431759181435 35.0 32.0 39.0 22.0 41.0 47 33.01261578091339 35.0 32.0 39.0 22.0 41.0 48 32.965367702109226 35.0 32.0 38.0 22.0 41.0 49 33.012680609619316 35.0 32.0 38.0 22.0 40.0 50 32.834128584582814 35.0 32.0 38.0 21.0 40.0 51 32.60129714782379 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 6.0 12 8.0 13 7.0 14 22.0 15 64.0 16 171.0 17 433.0 18 1093.0 19 2225.0 20 3693.0 21 5864.0 22 8675.0 23 12819.0 24 18322.0 25 26174.0 26 33754.0 27 38771.0 28 41451.0 29 45447.0 30 52636.0 31 64235.0 32 80870.0 33 107435.0 34 199311.0 35 287134.0 36 115377.0 37 140131.0 38 192517.0 39 264344.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.58258918966986 22.89652363235813 28.623135816138905 14.897751361833103 2 31.35317015240483 24.909254154343955 30.525657538058184 13.211918155193036 3 28.688194004205258 24.9709274807737 32.1870508962712 14.15382761874984 4 25.959192337591187 26.76083084010545 31.73537266466061 15.54460415764276 5 22.40273542716667 32.87624314780658 30.54309818106715 14.1779232439596 6 20.07177054080336 42.214043733559755 27.416289216347163 10.297896509289723 7 85.63407350886804 5.324788948139904 7.472971306126312 1.568166236865733 8 87.44933464520625 3.754614742506691 6.922443640619487 1.8736069716675605 9 83.88226418558222 4.859513899446661 8.48039792203918 2.77782399293195 10 56.45243552268862 19.63707398791203 12.64762156099492 11.262868928404439 11 51.19729440551216 18.169535671565153 17.79702877992949 12.836141142993194 12 45.038968936723165 19.60311063047351 23.06984002225977 12.288080410543557 13 22.70094747440557 40.794237703342695 23.649282438018307 12.85553238423343 14 16.032597938676634 43.45864014618013 27.430058145038455 13.078703770104788 15 14.387842035965589 20.820570779464788 50.998849720748915 13.792737463820707 16 15.638519725424613 15.172670971369234 49.42253686774084 19.766272435465318 17 15.929962049390294 16.28439722211864 29.340726483100077 38.44491424539099 18 22.935650338055886 21.425084119548725 34.10219413615749 21.5370714062379 19 30.807060018186462 23.560759700640542 25.329493332109426 20.30268694906357 20 32.73258732512743 21.861157565309185 23.219519751241354 22.186735358322025 21 23.861094457719346 27.19065089741861 27.058067588228713 21.890187056633327 22 23.30758352432941 23.872740676570732 24.835934609062825 27.98374119003703 23 20.38220251225578 29.948509943748192 23.99941482053062 25.66987272346541 24 22.54231794177464 22.885508489405098 37.58475779593874 16.98741577288152 25 18.262361199158946 23.009945182452647 35.74293410133358 22.984759517054826 26 17.745510038409574 32.548427903881404 27.14813933008425 22.557922727624774 27 19.02200446916477 31.429300853960427 29.163681008344543 20.385013668530252 28 15.343864651430964 27.704920384038367 39.34580377555499 17.60541118897568 29 17.49629242909719 23.579519865982427 37.80924870414301 21.114939000777373 30 19.571786317700816 28.201978709794012 32.460708354010634 19.76552661849454 31 31.746789401367142 24.97775457458313 23.432020217376962 19.84343580667277 32 31.872258764066537 26.118969280946384 24.883724265728848 17.125047689258228 33 29.757867651910008 25.71140899168414 24.904320288229574 19.626403068176277 34 20.88092458356162 26.93099185051533 28.448327792295714 23.739755773627337 35 20.971340548634437 24.789005510440003 31.15283223994653 23.08682170097903 36 31.33515580403372 23.70286651884192 25.817659224751942 19.144318452372417 37 22.094540906626584 31.945234086130387 27.29156567061854 18.66865933662449 38 22.081288312761217 32.193419025790924 22.11439111215653 23.61090154929133 39 22.053176750016494 30.08665819495082 25.66866794220492 22.191497112827765 40 23.65983861668163 25.844508635699963 24.781317858587364 25.714334889031043 41 17.85055549021689 23.3966225965331 26.25143784906386 32.501384064186155 42 22.924692565639067 25.315150698055998 23.31458272974748 28.44557400655745 43 23.580208312416993 25.52122566413567 24.14439016554268 26.754175857904656 44 21.160892800284557 29.423626907928895 26.977003020558733 22.438477271227818 45 19.16967622937888 34.55215125168167 22.559356991030118 23.71881552790933 46 23.113269518173553 31.700663490251312 25.434424042844316 19.751642948730822 47 23.42903694949385 26.404789292363123 26.975798239298243 23.190375518844785 48 23.505798726947802 22.22442780061444 29.44978787244235 24.819985599995412 49 21.432943883010005 21.699200541577863 32.244937767310844 24.622917808101295 50 20.277788136346818 30.673444039344716 26.63983637923072 22.40893144507775 51 18.777720725966766 33.49452541658181 23.712676880534463 24.015076976916966 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 909.0 1 1400.0 2 1891.0 3 9035.0 4 16179.0 5 11956.5 6 7734.0 7 8204.0 8 8674.0 9 9177.5 10 9681.0 11 9728.5 12 9776.0 13 9368.0 14 8960.0 15 8469.5 16 7979.0 17 7499.0 18 7019.0 19 6705.5 20 6392.0 21 6047.5 22 5703.0 23 5671.0 24 5639.0 25 6033.5 26 7120.5 27 7813.0 28 10170.0 29 12527.0 30 14940.0 31 17353.0 32 20623.5 33 23894.0 34 26361.5 35 28829.0 36 30126.0 37 31423.0 38 41117.5 39 50812.0 40 79140.5 41 107469.0 42 136541.5 43 165614.0 44 168880.0 45 172146.0 46 163446.0 47 154746.0 48 151042.0 49 147338.0 50 139195.5 51 131053.0 52 120239.5 53 109426.0 54 100381.0 55 91336.0 56 87592.5 57 83849.0 58 77905.5 59 71962.0 60 69807.5 61 67653.0 62 60717.5 63 53782.0 64 47908.0 65 42034.0 66 33375.5 67 24717.0 68 20583.5 69 16450.0 70 13711.0 71 10972.0 72 9378.0 73 7784.0 74 6516.5 75 3662.5 76 2076.0 77 1536.0 78 996.0 79 724.5 80 453.0 81 327.0 82 201.0 83 133.0 84 65.0 85 49.0 86 33.0 87 22.0 88 11.0 89 10.0 90 9.0 91 7.0 92 5.0 93 7.0 94 9.0 95 5.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1743055.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.42579034581574 #Duplication Level Percentage of deduplicated Percentage of total 1 82.62975812321626 13.572590832574155 2 7.036026381892427 2.31144588433187 3 2.262342310915837 1.1148228146871548 4 1.0603968940172057 0.6967142825792326 5 0.6471510376948199 0.5314983633626106 6 0.47337088956109313 0.4665294592645688 7 0.32355750091997654 0.37202813724493333 8 0.2641806087851785 0.34715002346682483 9 0.2349962241777444 0.34739988393617516 >10 2.4803169781781276 9.30807937040945 >50 0.8647409091508853 10.383837370793843 >100 1.6992878493916619 56.79141315797781 >500 0.020714459321096702 2.1886813288093396 >1k 0.0024576477160623204 0.518508479851517 >5k 7.021850617320916E-4 1.0493006107105276 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 9479 0.5438153127698209 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8716 0.5000415936387549 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06178806750217291 0.0 2 0.0 0.0 0.0 0.21777855546726868 0.0 3 0.0 0.0 0.0 0.30612918123639243 0.0 4 0.0 0.0 0.0 0.43033639213908914 0.0 5 0.0 0.0 0.0 0.6424352645211998 0.0 6 0.0 0.0 0.0 0.87042577543451 0.0 7 0.0 0.0 0.0 1.0110983302305434 0.0 8 0.0 0.0 0.0 1.4730458878233905 0.0 9 0.0 0.0 0.0 1.6765965503096574 0.0 10 0.0 0.0 0.0 1.9979862941788986 0.0 11 0.0 0.0 0.0 2.2204118630794785 0.0 12 0.0 0.0 0.0 2.423331449667394 0.0 13 0.0 0.0 0.0 2.5045107584098036 0.0 14 0.0 0.0 0.0 2.53440080777715 0.0 15 0.0 0.0 0.0 2.586034290369495 0.0 16 0.0 0.0 0.0 2.6999148047537225 0.0 17 0.0 0.0 0.0 2.829859069277791 0.0 18 0.0 0.0 0.0 3.0612918123639243 0.0 19 0.0 0.0 0.0 3.1414958219907003 0.0 20 0.0 0.0 0.0 3.24969665328977 0.0 21 0.0 0.0 0.0 3.3530209890106737 0.0 22 0.0 0.0 0.0 3.451640940762053 0.0 23 0.0 0.0 0.0 3.565636196218708 0.0 24 0.0 0.0 0.0 3.6485366210475285 0.0 25 5.737053621371672E-5 0.0 0.0 3.71061154123077 0.0 26 5.737053621371672E-5 0.0 0.0 3.780718336483932 0.0 27 5.737053621371672E-5 0.0 0.0 3.857078520184389 0.0 28 5.737053621371672E-5 0.0 0.0 3.9298817306395954 0.0 29 5.737053621371672E-5 0.0 0.0 4.004922392007137 0.0 30 5.737053621371672E-5 0.0 0.0 4.106869834858911 0.0 31 5.737053621371672E-5 0.0 0.0 4.205489786610291 0.0 32 5.737053621371672E-5 0.0 0.0 4.289537622163386 0.0 33 5.737053621371672E-5 0.0 0.0 4.376683466672021 0.0 34 5.737053621371672E-5 0.0 0.0 4.471057998743586 0.0 35 5.737053621371672E-5 0.0 0.0 4.592224571226955 0.0 36 1.1474107242743344E-4 0.0 0.0 4.691475598876685 0.0 37 1.1474107242743344E-4 0.0 0.0 4.785735389875821 0.0 38 1.1474107242743344E-4 0.0 0.0 4.883953747873704 0.0 39 1.1474107242743344E-4 0.0 0.0 4.991179280057141 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAC 20 7.03429E-4 45.000004 32 TTCTACG 20 7.03429E-4 45.000004 1 GGTACGA 20 7.03429E-4 45.000004 2 AGTTTCG 20 7.03429E-4 45.000004 1 ACGTTCC 40 6.8193913E-9 45.000004 10 GCGAAGT 20 7.03429E-4 45.000004 13 GTTTAAC 20 7.03429E-4 45.000004 42 CACGACC 80 0.0 45.000004 27 TCGATAT 20 7.03429E-4 45.000004 42 TTATCCG 20 7.03429E-4 45.000004 38 CGGATAT 20 7.03429E-4 45.000004 2 TCTAACG 40 6.8193913E-9 45.000004 1 TATAGCG 230 0.0 45.000004 1 CGTCGGA 20 7.03429E-4 45.000004 18 CGTCGAG 20 7.03429E-4 45.000004 26 TCGAGTG 40 6.8193913E-9 45.000004 31 CGCGTGT 20 7.03429E-4 45.000004 20 CGCAATC 20 7.03429E-4 45.000004 22 GCTAACC 20 7.03429E-4 45.000004 40 TTCGCGA 40 6.8193913E-9 45.000004 16 >>END_MODULE