##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546359_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2055644 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.131042631895404 31.0 31.0 33.0 30.0 34.0 2 31.469733086079106 31.0 31.0 34.0 30.0 34.0 3 31.51228325527183 31.0 31.0 34.0 30.0 34.0 4 35.360079858185564 37.0 35.0 37.0 33.0 37.0 5 35.26120086941124 37.0 35.0 37.0 33.0 37.0 6 35.296150014302086 37.0 35.0 37.0 32.0 37.0 7 35.76218109750521 37.0 35.0 37.0 35.0 37.0 8 35.677246643874135 37.0 35.0 37.0 35.0 37.0 9 37.45047148241622 39.0 37.0 39.0 35.0 39.0 10 36.98699531630963 39.0 37.0 39.0 33.0 39.0 11 36.62060454047491 39.0 35.0 39.0 32.0 39.0 12 35.42048623205185 37.0 35.0 39.0 31.0 39.0 13 34.818812012196666 37.0 34.0 39.0 28.0 39.0 14 35.60277898313132 37.0 34.0 40.0 27.0 41.0 15 36.090374111470666 37.0 35.0 40.0 31.0 41.0 16 36.3314849263783 37.0 35.0 40.0 32.0 41.0 17 36.295560904514595 37.0 35.0 40.0 31.0 41.0 18 36.22272387631321 36.0 35.0 40.0 31.0 41.0 19 36.046020127998815 36.0 35.0 40.0 31.0 41.0 20 35.850214823189226 36.0 34.0 40.0 31.0 41.0 21 35.65113414579567 35.0 34.0 40.0 30.0 41.0 22 35.518438990408846 35.0 34.0 40.0 30.0 41.0 23 35.50296889928412 35.0 34.0 40.0 30.0 41.0 24 35.47142258095273 35.0 34.0 40.0 30.0 41.0 25 35.41171477162388 35.0 34.0 40.0 30.0 41.0 26 35.26933505996175 35.0 34.0 40.0 30.0 41.0 27 35.15101058354462 35.0 34.0 40.0 29.0 41.0 28 35.14115479139384 35.0 34.0 40.0 29.0 41.0 29 35.13736327885568 35.0 34.0 40.0 29.0 41.0 30 35.009274465812176 36.0 34.0 40.0 29.0 41.0 31 34.70473438007748 35.0 34.0 40.0 27.0 41.0 32 34.4196582676767 35.0 34.0 40.0 26.0 41.0 33 34.184672540576095 35.0 33.0 40.0 25.0 41.0 34 33.96348540895213 35.0 33.0 39.0 23.0 41.0 35 33.768562552659894 35.0 33.0 39.0 23.0 41.0 36 33.50691024321332 35.0 33.0 39.0 22.0 41.0 37 33.29597002204662 35.0 33.0 39.0 22.0 41.0 38 33.256689874316756 35.0 32.0 39.0 23.0 41.0 39 33.2297912479009 35.0 32.0 39.0 22.0 41.0 40 32.95374199034463 35.0 32.0 39.0 21.0 41.0 41 32.90330232277574 35.0 32.0 39.0 20.0 41.0 42 32.84988354014606 35.0 32.0 39.0 20.0 41.0 43 32.73209612170201 35.0 32.0 38.0 20.0 41.0 44 32.52538620500437 35.0 31.0 38.0 18.0 41.0 45 32.51131421588563 35.0 31.0 38.0 18.0 40.0 46 32.461024866173325 35.0 31.0 38.0 18.0 40.0 47 32.42327757140828 35.0 31.0 38.0 18.0 40.0 48 32.4081499520345 35.0 31.0 38.0 18.0 40.0 49 32.42069103405064 35.0 31.0 38.0 18.0 40.0 50 32.22056153691982 35.0 31.0 38.0 18.0 40.0 51 31.97463276715229 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 4.0 14 37.0 15 111.0 16 279.0 17 767.0 18 1716.0 19 3277.0 20 5679.0 21 9067.0 22 13093.0 23 18977.0 24 26302.0 25 36110.0 26 46015.0 27 51858.0 28 54401.0 29 59032.0 30 67896.0 31 81716.0 32 101384.0 33 132195.0 34 240889.0 35 346975.0 36 129529.0 37 151373.0 38 202720.0 39 274187.0 40 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.91097291165202 23.894847551424274 28.980212527071807 15.2139670098519 2 30.790399504972648 25.92087929622055 30.599218541731933 12.689502657074863 3 27.577197218973716 26.273323591049813 32.555101953451086 13.59437723652539 4 25.1157301556106 28.06594916240361 32.14165487798471 14.676665804001082 5 23.102492454919236 33.050226595655666 30.527124346433528 13.320156602991567 6 19.620858475494785 40.43564936341117 28.667512468112182 11.27597969298186 7 84.76842293704551 5.161740067832757 8.201955202359942 1.8678817927617817 8 85.83324739108524 4.235704236725814 7.288470182580252 2.6425781896087064 9 82.76233628001735 4.860180070089958 9.408049253664545 2.9694343962281406 10 58.04852396621205 18.35108608299881 12.665130732753338 10.935259218035807 11 51.89736160541417 17.703065316757183 19.39547898371508 11.004094094113572 12 46.05281848413441 19.864675011821113 22.967303677095842 11.115202826948636 13 21.785678843223828 43.83784351765188 23.890177482093204 10.486300157031081 14 12.67208719019441 46.79312176622022 28.22497475243768 12.309816291147689 15 11.128629276275465 21.211260315502102 55.615612430946214 12.04449797727622 16 12.771520749701798 14.609241678033747 52.55452792409581 20.06470964816865 17 13.739635851343909 15.623473714320186 30.38998970638885 40.24690072794706 18 21.267933552696867 20.500096320179953 35.54263286833713 22.689337258786054 19 28.569635598381822 23.136690983458223 25.9443755825425 22.349297835617453 20 31.431025994773414 20.10552410825999 24.85688183362489 23.606568063341708 21 21.10380007433194 28.293566395737784 27.66320432915427 22.93942920077601 22 21.65535472095363 24.23590855225905 24.85235770396041 29.256379022826913 23 17.259165497527782 31.56553372081936 23.840557995450574 27.33474278620228 24 19.76144702098223 22.671289386683686 39.43007641400943 18.137187178324652 25 14.935319539764668 22.93670499366622 37.80820025257292 24.3197752139962 26 14.468020727324383 33.752099098871206 29.368509333328145 22.41137084047627 27 16.00486270969098 34.37385072512556 29.495136317377913 20.126150247805555 28 13.352895734864598 28.381665307806216 40.75666798336677 17.508770973962417 29 13.541011965106797 23.91017121641685 39.96188055908513 22.58693625939122 30 17.731523551743393 29.126979185111818 32.712035741597276 20.429461521547505 31 30.11260704674545 25.3906804874774 23.53004703148989 20.96666543428726 32 30.466656677907267 26.36764926222634 24.752340385786646 18.41335367407975 33 27.494060255569547 26.025663976836455 25.08172621329374 21.39854955430026 34 19.309034054534735 27.012362062691793 27.92477685824977 25.7538270245237 35 19.598578353061132 23.977498049273123 31.715121879080233 24.708801718585512 36 30.979050847325706 22.217757549458952 27.29164193800094 19.511549665214407 37 20.79455392081508 30.349369832519642 28.32090575994676 20.535170486718517 38 20.849135356121977 32.62189367419651 22.229140843453436 24.299830126228084 39 20.44011511720901 29.74790381992213 27.377551755070428 22.434429307798432 40 25.03278777842856 23.77118800726196 24.72363891802277 26.47238529628671 41 16.62320907705809 22.776414593188317 26.927619762955064 33.67275656679853 42 22.72426548565802 24.30459748867022 23.707558312626116 29.263578713045646 43 23.38191826989498 25.013961561437682 25.528982644854846 26.07513752381249 44 20.130771670581094 30.22974795246648 27.453099855811608 22.18638052114082 45 16.930071549353876 35.814664406872005 23.132020914127153 24.123243129646962 46 22.85191404737396 31.08242477783118 26.220347492075476 19.845313682719382 47 22.38544222637772 25.767788585961384 26.750059835263308 25.096709352397596 48 24.619000177073463 21.545267565784737 29.716478145048463 24.119254112093337 49 21.558645368556036 20.396430510341286 33.19850129691717 24.84642282418551 50 19.47992940411861 31.259449593412086 26.40924206720619 22.85137893526311 51 18.352496833109235 34.02773048251546 22.49397269176959 25.125799992605724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1542.0 1 1932.0 2 2322.0 3 9057.5 4 15793.0 5 12603.5 6 9414.0 7 10370.5 8 11327.0 9 12115.5 10 12904.0 11 13061.5 12 13219.0 13 12770.5 14 12322.0 15 12021.5 16 11721.0 17 11049.5 18 10378.0 19 9946.0 20 9514.0 21 8977.5 22 8441.0 23 7968.0 24 7495.0 25 7799.5 26 7913.0 27 7722.0 28 8591.0 29 9460.0 30 12934.5 31 16409.0 32 18709.0 33 21009.0 34 24096.0 35 27183.0 36 30191.0 37 33199.0 38 48372.0 39 63545.0 40 99462.0 41 135379.0 42 179367.0 43 223355.0 44 227732.0 45 232109.0 46 226070.5 47 220032.0 48 203507.0 49 186982.0 50 172764.0 51 158546.0 52 144719.0 53 130892.0 54 113573.0 55 96254.0 56 87724.5 57 79195.0 58 72001.5 59 64808.0 60 65160.0 61 65512.0 62 60977.5 63 56443.0 64 45555.5 65 34668.0 66 29745.5 67 24823.0 68 19657.0 69 14491.0 70 11465.0 71 8439.0 72 6780.0 73 5121.0 74 3814.0 75 2130.0 76 1753.0 77 1106.5 78 460.0 79 402.0 80 344.0 81 322.0 82 300.0 83 201.0 84 102.0 85 74.0 86 46.0 87 39.0 88 32.0 89 22.0 90 12.0 91 11.0 92 10.0 93 7.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2055644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.171150955843345 #Duplication Level Percentage of deduplicated Percentage of total 1 82.42959945499223 14.978406949263661 2 7.916342175927871 2.876980973937894 3 2.710810313295983 1.4777563024667488 4 1.265738686067949 0.9199971494076602 5 0.7595540642364925 0.6900985780182819 6 0.48943350831727434 0.5336142097488721 7 0.36404784008838015 0.46306177801762716 8 0.2536534474664733 0.36873400675066925 9 0.19156285776142096 0.3132825845323974 >10 1.735432383677518 6.708171880747421 >50 0.4686672638027402 6.208716717012722 >100 1.3831055105478167 59.45521144388132 >500 0.02908965825487337 3.4180361867142377 >1k 0.002424138187906114 0.5907021985430743 >5k 2.693486875451238E-4 0.4139662934192826 >10k+ 2.693486875451238E-4 0.5832627475381403 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11917 0.5797210022747129 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8458 0.411452566689563 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09471484362078259 0.0 2 0.0 0.0 0.0 0.3278777842856059 0.0 3 0.0 0.0 0.0 0.46423407944177103 0.0 4 0.0 0.0 0.0 0.7369953163096333 0.0 5 0.0 0.0 0.0 1.1882407654243634 0.0 6 0.0 0.0 0.0 1.6870625458493786 0.0 7 0.0 0.0 0.0 2.0151835629126444 0.0 8 0.0 0.0 0.0 2.9852445267760372 0.0 9 0.0 0.0 0.0 3.4442247782203532 0.0 10 0.0 0.0 0.0 4.24441197016604 0.0 11 0.0 0.0 0.0 4.6853443495079885 0.0 12 0.0 0.0 0.0 5.234661254575209 0.0 13 0.0 0.0 0.0 5.413680578932928 0.0 14 0.0 0.0 0.0 5.474245540570254 0.0 15 0.0 0.0 0.0 5.5889541185146845 0.0 16 0.0 0.0 0.0 5.829608628731434 0.0 17 0.0 0.0 0.0 6.108256098818667 0.0 18 0.0 0.0 0.0 6.67698297954315 0.0 19 0.0 0.0 0.0 6.82983045702466 0.0 20 0.0 0.0 0.0 7.03234606770433 0.0 21 0.0 0.0 0.0 7.202657658621824 0.0 22 0.0 0.0 0.0 7.346846049218639 0.0 23 0.0 0.0 0.0 7.515941476247833 0.0 24 0.0 0.0 0.0 7.632644562969074 0.0 25 0.0 0.0 0.0 7.723808208036022 0.0 26 0.0 0.0 0.0 7.81842575854574 0.0 27 0.0 0.0 0.0 7.908081360391196 0.0 28 0.0 0.0 0.0 7.999390945124739 0.0 29 0.0 0.0 0.0 8.099310970187444 0.0 30 0.0 0.0 0.0 8.254055663334702 0.0 31 0.0 0.0 0.0 8.389536320491292 0.0 32 0.0 0.0 0.0 8.505509708879552 0.0 33 0.0 0.0 0.0 8.627272037376121 0.0 34 0.0 0.0 0.0 8.744315649986087 0.0 35 0.0 0.0 0.0 8.90801130935123 0.0 36 4.8646555531989E-5 0.0 0.0 9.024130637406088 0.0 37 4.8646555531989E-5 0.0 0.0 9.139958086127754 0.0 38 4.8646555531989E-5 0.0 0.0 9.254374784738992 0.0 39 4.8646555531989E-5 0.0 0.0 9.36830501779491 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGA 35 1.2125565E-7 45.000004 23 TCTGCGA 35 1.2125565E-7 45.000004 1 AACGTTC 30 2.16634E-6 45.000004 14 TTGATCG 30 2.16634E-6 45.000004 39 ACGTTGC 60 0.0 45.000004 33 GCGCGTT 35 1.2125565E-7 45.000004 43 ACGTTAG 75 0.0 45.000004 1 GCAACTA 35 1.2125565E-7 45.000004 34 CGCATCG 35 1.2125565E-7 45.000004 21 GACCGGA 35 1.2125565E-7 45.000004 13 CACGCGA 30 2.16634E-6 45.000004 34 TCTAGTA 30 2.16634E-6 45.000004 30 CTGCGTA 30 2.16634E-6 45.000004 1 CATTACG 30 2.16634E-6 45.000004 33 TACGCTA 35 1.2125565E-7 45.000004 21 TCGGAAA 30 2.16634E-6 45.000004 43 TCTACCG 30 2.16634E-6 45.000004 15 CGTACTC 30 2.16634E-6 45.000004 43 CAATCGT 70 0.0 45.000004 13 TCGAATC 30 2.16634E-6 45.000004 12 >>END_MODULE